miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22864 3' -51 NC_005137.2 + 40109 0.72 0.795437
Target:  5'- -cGCGCGCAACGUGCu-UACGCa--- -3'
miRNA:   3'- guUGCGCGUUGUACGuuGUGCGacuu -5'
22864 3' -51 NC_005137.2 + 35518 0.72 0.785713
Target:  5'- gCGAUGCGCc-CGUGCGGCGCGCa--- -3'
miRNA:   3'- -GUUGCGCGuuGUACGUUGUGCGacuu -5'
22864 3' -51 NC_005137.2 + 35239 0.7 0.896316
Target:  5'- aAACGuCcCGACGUGCGACGCccGCUGAu -3'
miRNA:   3'- gUUGC-GcGUUGUACGUUGUG--CGACUu -5'
22864 3' -51 NC_005137.2 + 32987 0.69 0.927869
Target:  5'- gCAGCGCcCGACGUGC---ACGCUGGc -3'
miRNA:   3'- -GUUGCGcGUUGUACGuugUGCGACUu -5'
22864 3' -51 NC_005137.2 + 32373 0.76 0.572782
Target:  5'- cCAACGCGCAGCaAUGUAACAaauUGUUGAc -3'
miRNA:   3'- -GUUGCGCGUUG-UACGUUGU---GCGACUu -5'
22864 3' -51 NC_005137.2 + 31647 0.67 0.970946
Target:  5'- -cGCGCGCGGac-GCGAcCACGCUGu- -3'
miRNA:   3'- guUGCGCGUUguaCGUU-GUGCGACuu -5'
22864 3' -51 NC_005137.2 + 31590 0.72 0.775832
Target:  5'- aCAuCGCGacaAugAUGCAacGCACGCUGGAu -3'
miRNA:   3'- -GUuGCGCg--UugUACGU--UGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 31450 0.7 0.866349
Target:  5'- gGACGUGUcggAACAaGCgAGCGCGCUGAc -3'
miRNA:   3'- gUUGCGCG---UUGUaCG-UUGUGCGACUu -5'
22864 3' -51 NC_005137.2 + 30939 0.71 0.8499
Target:  5'- -cGCGCGCcGCG-GCAcaaaGCAUGCUGAAc -3'
miRNA:   3'- guUGCGCGuUGUaCGU----UGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 30801 0.8 0.349167
Target:  5'- uCGACGCGCAcCA-GCAACACGUUGGGa -3'
miRNA:   3'- -GUUGCGCGUuGUaCGUUGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 28047 0.68 0.952652
Target:  5'- aCGugGCGCGAC-----GCGCGCUGGGa -3'
miRNA:   3'- -GUugCGCGUUGuacguUGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 26669 0.7 0.858241
Target:  5'- aCGACGaCGCAcgcACGUGCgaacguuugAugGCGCUGAAc -3'
miRNA:   3'- -GUUGC-GCGU---UGUACG---------UugUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 26546 0.67 0.956812
Target:  5'- -cACGUGCAACAaGuCGugGCGCUGc- -3'
miRNA:   3'- guUGCGCGUUGUaC-GUugUGCGACuu -5'
22864 3' -51 NC_005137.2 + 26301 0.75 0.649015
Target:  5'- -uACGCGUAcaACG-GCGGCGCGCUGGAc -3'
miRNA:   3'- guUGCGCGU--UGUaCGUUGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 26130 0.67 0.967776
Target:  5'- uCGACGgGUgcugAGCAuUGCAACGCGCaaaUGAAa -3'
miRNA:   3'- -GUUGCgCG----UUGU-ACGUUGUGCG---ACUU- -5'
22864 3' -51 NC_005137.2 + 25509 0.66 0.981408
Target:  5'- aCAugGCGCcgucACGcucguUGCAACGCGCg--- -3'
miRNA:   3'- -GUugCGCGu---UGU-----ACGUUGUGCGacuu -5'
22864 3' -51 NC_005137.2 + 24603 0.72 0.765804
Target:  5'- uCAGCGUGUuGCAUGUuGCGCGUUGGc -3'
miRNA:   3'- -GUUGCGCGuUGUACGuUGUGCGACUu -5'
22864 3' -51 NC_005137.2 + 24002 0.69 0.903164
Target:  5'- --cUGCGCAGCGUuugcGCAAcCACGUUGAu -3'
miRNA:   3'- guuGCGCGUUGUA----CGUU-GUGCGACUu -5'
22864 3' -51 NC_005137.2 + 19591 0.66 0.983512
Target:  5'- gAACuGCGCGACAaGCugUACGCcGAAu -3'
miRNA:   3'- gUUG-CGCGUUGUaCGuuGUGCGaCUU- -5'
22864 3' -51 NC_005137.2 + 16773 0.68 0.952652
Target:  5'- uGACG-GCAccGCGuuUGcCAACACGCUGGAu -3'
miRNA:   3'- gUUGCgCGU--UGU--AC-GUUGUGCGACUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.