Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22864 | 3' | -51 | NC_005137.2 | + | 40109 | 0.72 | 0.795437 |
Target: 5'- -cGCGCGCAACGUGCu-UACGCa--- -3' miRNA: 3'- guUGCGCGUUGUACGuuGUGCGacuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 35518 | 0.72 | 0.785713 |
Target: 5'- gCGAUGCGCc-CGUGCGGCGCGCa--- -3' miRNA: 3'- -GUUGCGCGuuGUACGUUGUGCGacuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 35239 | 0.7 | 0.896316 |
Target: 5'- aAACGuCcCGACGUGCGACGCccGCUGAu -3' miRNA: 3'- gUUGC-GcGUUGUACGUUGUG--CGACUu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 32987 | 0.69 | 0.927869 |
Target: 5'- gCAGCGCcCGACGUGC---ACGCUGGc -3' miRNA: 3'- -GUUGCGcGUUGUACGuugUGCGACUu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 32373 | 0.76 | 0.572782 |
Target: 5'- cCAACGCGCAGCaAUGUAACAaauUGUUGAc -3' miRNA: 3'- -GUUGCGCGUUG-UACGUUGU---GCGACUu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 31647 | 0.67 | 0.970946 |
Target: 5'- -cGCGCGCGGac-GCGAcCACGCUGu- -3' miRNA: 3'- guUGCGCGUUguaCGUU-GUGCGACuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 31590 | 0.72 | 0.775832 |
Target: 5'- aCAuCGCGacaAugAUGCAacGCACGCUGGAu -3' miRNA: 3'- -GUuGCGCg--UugUACGU--UGUGCGACUU- -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 31450 | 0.7 | 0.866349 |
Target: 5'- gGACGUGUcggAACAaGCgAGCGCGCUGAc -3' miRNA: 3'- gUUGCGCG---UUGUaCG-UUGUGCGACUu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 30939 | 0.71 | 0.8499 |
Target: 5'- -cGCGCGCcGCG-GCAcaaaGCAUGCUGAAc -3' miRNA: 3'- guUGCGCGuUGUaCGU----UGUGCGACUU- -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 30801 | 0.8 | 0.349167 |
Target: 5'- uCGACGCGCAcCA-GCAACACGUUGGGa -3' miRNA: 3'- -GUUGCGCGUuGUaCGUUGUGCGACUU- -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 28047 | 0.68 | 0.952652 |
Target: 5'- aCGugGCGCGAC-----GCGCGCUGGGa -3' miRNA: 3'- -GUugCGCGUUGuacguUGUGCGACUU- -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 26669 | 0.7 | 0.858241 |
Target: 5'- aCGACGaCGCAcgcACGUGCgaacguuugAugGCGCUGAAc -3' miRNA: 3'- -GUUGC-GCGU---UGUACG---------UugUGCGACUU- -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 26546 | 0.67 | 0.956812 |
Target: 5'- -cACGUGCAACAaGuCGugGCGCUGc- -3' miRNA: 3'- guUGCGCGUUGUaC-GUugUGCGACuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 26301 | 0.75 | 0.649015 |
Target: 5'- -uACGCGUAcaACG-GCGGCGCGCUGGAc -3' miRNA: 3'- guUGCGCGU--UGUaCGUUGUGCGACUU- -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 26130 | 0.67 | 0.967776 |
Target: 5'- uCGACGgGUgcugAGCAuUGCAACGCGCaaaUGAAa -3' miRNA: 3'- -GUUGCgCG----UUGU-ACGUUGUGCG---ACUU- -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 25509 | 0.66 | 0.981408 |
Target: 5'- aCAugGCGCcgucACGcucguUGCAACGCGCg--- -3' miRNA: 3'- -GUugCGCGu---UGU-----ACGUUGUGCGacuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 24603 | 0.72 | 0.765804 |
Target: 5'- uCAGCGUGUuGCAUGUuGCGCGUUGGc -3' miRNA: 3'- -GUUGCGCGuUGUACGuUGUGCGACUu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 24002 | 0.69 | 0.903164 |
Target: 5'- --cUGCGCAGCGUuugcGCAAcCACGUUGAu -3' miRNA: 3'- guuGCGCGUUGUA----CGUU-GUGCGACUu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 19591 | 0.66 | 0.983512 |
Target: 5'- gAACuGCGCGACAaGCugUACGCcGAAu -3' miRNA: 3'- gUUG-CGCGUUGUaCGuuGUGCGaCUU- -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 16773 | 0.68 | 0.952652 |
Target: 5'- uGACG-GCAccGCGuuUGcCAACACGCUGGAu -3' miRNA: 3'- gUUGCgCGU--UGU--AC-GUUGUGCGACUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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