Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22864 | 3' | -51 | NC_005137.2 | + | 100049 | 0.68 | 0.938591 |
Target: 5'- gCGGCGCGCGgcGCGUuCAGCAUGCUu-- -3' miRNA: 3'- -GUUGCGCGU--UGUAcGUUGUGCGAcuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 24603 | 0.72 | 0.765804 |
Target: 5'- uCAGCGUGUuGCAUGUuGCGCGUUGGc -3' miRNA: 3'- -GUUGCGCGuUGUACGuUGUGCGACUu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 40109 | 0.72 | 0.795437 |
Target: 5'- -cGCGCGCAACGUGCu-UACGCa--- -3' miRNA: 3'- guUGCGCGUUGUACGuuGUGCGacuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 110829 | 0.68 | 0.933366 |
Target: 5'- cCGACGCGCAAgA-GUcguGCGCGCUGu- -3' miRNA: 3'- -GUUGCGCGUUgUaCGu--UGUGCGACuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 12212 | 0.71 | 0.814371 |
Target: 5'- -cACGCGC-GCAUGUAACGCuucaucGCUGGAu -3' miRNA: 3'- guUGCGCGuUGUACGUUGUG------CGACUU- -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 81599 | 0.66 | 0.983311 |
Target: 5'- uGACGCgGCAGCAguaagcagggucgUGC-ACACGCcGGAa -3' miRNA: 3'- gUUGCG-CGUUGU-------------ACGuUGUGCGaCUU- -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 117593 | 0.68 | 0.943545 |
Target: 5'- uGACGgGCGACGUGU-ACGCuGUUGAu -3' miRNA: 3'- gUUGCgCGUUGUACGuUGUG-CGACUu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 64550 | 0.68 | 0.952222 |
Target: 5'- cCAACGUGCGcACGUuaaGCGACACGUuuccuauUGAGa -3' miRNA: 3'- -GUUGCGCGU-UGUA---CGUUGUGCG-------ACUU- -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 90172 | 0.68 | 0.952222 |
Target: 5'- -cGCGUGCAACGcGUuacaauucucacaAACGCGCUGGu -3' miRNA: 3'- guUGCGCGUUGUaCG-------------UUGUGCGACUu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 51889 | 0.66 | 0.981408 |
Target: 5'- aAACGUguauaguuagaGCAGCGguUGCGACACGUgGAAa -3' miRNA: 3'- gUUGCG-----------CGUUGU--ACGUUGUGCGaCUU- -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 25509 | 0.66 | 0.981408 |
Target: 5'- aCAugGCGCcgucACGcucguUGCAACGCGCg--- -3' miRNA: 3'- -GUugCGCGu---UGU-----ACGUUGUGCGacuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 3600 | 0.66 | 0.979108 |
Target: 5'- aGACGCGCAACAguuUGCGACuCGa---- -3' miRNA: 3'- gUUGCGCGUUGU---ACGUUGuGCgacuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 112026 | 0.66 | 0.979108 |
Target: 5'- uGACGCGCugcGACGUGCucaucAACAUGCg--- -3' miRNA: 3'- gUUGCGCG---UUGUACG-----UUGUGCGacuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 115739 | 0.66 | 0.976604 |
Target: 5'- gGACGCcaaggugcaacGCAACGUGCG-CGCGCg--- -3' miRNA: 3'- gUUGCG-----------CGUUGUACGUuGUGCGacuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 31647 | 0.67 | 0.970946 |
Target: 5'- -cGCGCGCGGac-GCGAcCACGCUGu- -3' miRNA: 3'- guUGCGCGUUguaCGUU-GUGCGACuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 9596 | 0.66 | 0.976604 |
Target: 5'- uCAACuaGcCAGCAUGCAGCGuCGCUu-- -3' miRNA: 3'- -GUUGcgC-GUUGUACGUUGU-GCGAcuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 130851 | 0.67 | 0.967776 |
Target: 5'- gAACGCGUugGACGcGCAGCccGCGcCUGAAu -3' miRNA: 3'- gUUGCGCG--UUGUaCGUUG--UGC-GACUU- -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 95888 | 0.67 | 0.964368 |
Target: 5'- -cACGgGCAugGUGCGuCGCGgUGAc -3' miRNA: 3'- guUGCgCGUugUACGUuGUGCgACUu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 49687 | 0.67 | 0.964368 |
Target: 5'- uGGCGCGCGGCG-GUAACuACGCg--- -3' miRNA: 3'- gUUGCGCGUUGUaCGUUG-UGCGacuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 16773 | 0.68 | 0.952652 |
Target: 5'- uGACG-GCAccGCGuuUGcCAACACGCUGGAu -3' miRNA: 3'- gUUGCgCGU--UGU--AC-GUUGUGCGACUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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