miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22865 5' -49.9 NC_005137.2 + 13029 0.66 0.993186
Target:  5'- aAUUCUccgccGUgACGGUGGUuucGUCGGACACg -3'
miRNA:   3'- aUGAGA-----CA-UGCCGCCGu--UAGUUUGUG- -5'
22865 5' -49.9 NC_005137.2 + 73120 0.66 0.992112
Target:  5'- ---cCUGUACGGCGucgucGUAGUCGucCACg -3'
miRNA:   3'- augaGACAUGCCGC-----CGUUAGUuuGUG- -5'
22865 5' -49.9 NC_005137.2 + 61359 0.66 0.992112
Target:  5'- cGCUCUGcgucaaauggGCGGcCGGCgAGUUGAugGCg -3'
miRNA:   3'- aUGAGACa---------UGCC-GCCG-UUAGUUugUG- -5'
22865 5' -49.9 NC_005137.2 + 812 0.67 0.986416
Target:  5'- cGCUacagGUgGCGGCGGCAcgUuuACACc -3'
miRNA:   3'- aUGAga--CA-UGCCGCCGUuaGuuUGUG- -5'
22865 5' -49.9 NC_005137.2 + 84949 0.67 0.98459
Target:  5'- cACgCUGUgcaGCGGCGGCAuaaccUCGuuGGCGCc -3'
miRNA:   3'- aUGaGACA---UGCCGCCGUu----AGU--UUGUG- -5'
22865 5' -49.9 NC_005137.2 + 112128 0.67 0.980387
Target:  5'- aACcuaUGU-CGGUGGCAAUgcCGAACACg -3'
miRNA:   3'- aUGag-ACAuGCCGCCGUUA--GUUUGUG- -5'
22865 5' -49.9 NC_005137.2 + 69428 0.68 0.975383
Target:  5'- uUugUUUGcugGCGGCGGCAAUUAuuauCAUu -3'
miRNA:   3'- -AugAGACa--UGCCGCCGUUAGUuu--GUG- -5'
22865 5' -49.9 NC_005137.2 + 26700 0.68 0.966219
Target:  5'- gGCgCUGaACGGCGGCGAagAAGC-Cg -3'
miRNA:   3'- aUGaGACaUGCCGCCGUUagUUUGuG- -5'
22865 5' -49.9 NC_005137.2 + 121488 0.69 0.947884
Target:  5'- cACgCUGUucgucaacgugacaaGCGGCGGCAgccccgccGUUGAGCACa -3'
miRNA:   3'- aUGaGACA---------------UGCCGCCGU--------UAGUUUGUG- -5'
22865 5' -49.9 NC_005137.2 + 88861 0.69 0.946029
Target:  5'- --aUCUGguuccACGGCGGUuccacgcGUCGAACGCa -3'
miRNA:   3'- augAGACa----UGCCGCCGu------UAGUUUGUG- -5'
22865 5' -49.9 NC_005137.2 + 96340 0.7 0.93074
Target:  5'- cGCUUgcugGUGCGGUGGCgGGUCGGguaaucgcucGCACa -3'
miRNA:   3'- aUGAGa---CAUGCCGCCG-UUAGUU----------UGUG- -5'
22865 5' -49.9 NC_005137.2 + 28288 0.7 0.925099
Target:  5'- cACUUUGUuuaaGCGGCGcCAGUCAAACu- -3'
miRNA:   3'- aUGAGACA----UGCCGCcGUUAGUUUGug -5'
22865 5' -49.9 NC_005137.2 + 34967 0.7 0.919184
Target:  5'- cGCUaaGUugGGCGGCGGUgGcuugaAACACc -3'
miRNA:   3'- aUGAgaCAugCCGCCGUUAgU-----UUGUG- -5'
22865 5' -49.9 NC_005137.2 + 58469 0.71 0.906535
Target:  5'- cGCUUUGU-CGGCGGCuAAUU--GCGCg -3'
miRNA:   3'- aUGAGACAuGCCGCCG-UUAGuuUGUG- -5'
22865 5' -49.9 NC_005137.2 + 103811 0.71 0.885556
Target:  5'- uUGCUggUGUGCGGCGGCGGguugguGCACg -3'
miRNA:   3'- -AUGAg-ACAUGCCGCCGUUaguu--UGUG- -5'
22865 5' -49.9 NC_005137.2 + 48462 0.71 0.878044
Target:  5'- gAC-CUGUACGGCaccgugacGGguAUCGAAUACa -3'
miRNA:   3'- aUGaGACAUGCCG--------CCguUAGUUUGUG- -5'
22865 5' -49.9 NC_005137.2 + 60483 0.72 0.845551
Target:  5'- cACcgCUGUcgguCGGUGGCcaAAUCAAACACg -3'
miRNA:   3'- aUGa-GACAu---GCCGCCG--UUAGUUUGUG- -5'
22865 5' -49.9 NC_005137.2 + 111181 0.72 0.843829
Target:  5'- gGCUUUGUGucgcggcguugcuUGGCGGCAAUCuuuuuggGAGCACc -3'
miRNA:   3'- aUGAGACAU-------------GCCGCCGUUAG-------UUUGUG- -5'
22865 5' -49.9 NC_005137.2 + 54410 0.72 0.836853
Target:  5'- --aUCUGUuCGGCGGC-GUCcAACACg -3'
miRNA:   3'- augAGACAuGCCGCCGuUAGuUUGUG- -5'
22865 5' -49.9 NC_005137.2 + 93566 0.73 0.827942
Target:  5'- aUACgugGUgcGCGGCGGCAAUCAcgcugauccaAACGCg -3'
miRNA:   3'- -AUGagaCA--UGCCGCCGUUAGU----------UUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.