Results 1 - 20 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22865 | 5' | -49.9 | NC_005137.2 | + | 13029 | 0.66 | 0.993186 |
Target: 5'- aAUUCUccgccGUgACGGUGGUuucGUCGGACACg -3' miRNA: 3'- aUGAGA-----CA-UGCCGCCGu--UAGUUUGUG- -5' |
|||||||
22865 | 5' | -49.9 | NC_005137.2 | + | 61359 | 0.66 | 0.992112 |
Target: 5'- cGCUCUGcgucaaauggGCGGcCGGCgAGUUGAugGCg -3' miRNA: 3'- aUGAGACa---------UGCC-GCCG-UUAGUUugUG- -5' |
|||||||
22865 | 5' | -49.9 | NC_005137.2 | + | 73120 | 0.66 | 0.992112 |
Target: 5'- ---cCUGUACGGCGucgucGUAGUCGucCACg -3' miRNA: 3'- augaGACAUGCCGC-----CGUUAGUuuGUG- -5' |
|||||||
22865 | 5' | -49.9 | NC_005137.2 | + | 812 | 0.67 | 0.986416 |
Target: 5'- cGCUacagGUgGCGGCGGCAcgUuuACACc -3' miRNA: 3'- aUGAga--CA-UGCCGCCGUuaGuuUGUG- -5' |
|||||||
22865 | 5' | -49.9 | NC_005137.2 | + | 84949 | 0.67 | 0.98459 |
Target: 5'- cACgCUGUgcaGCGGCGGCAuaaccUCGuuGGCGCc -3' miRNA: 3'- aUGaGACA---UGCCGCCGUu----AGU--UUGUG- -5' |
|||||||
22865 | 5' | -49.9 | NC_005137.2 | + | 112128 | 0.67 | 0.980387 |
Target: 5'- aACcuaUGU-CGGUGGCAAUgcCGAACACg -3' miRNA: 3'- aUGag-ACAuGCCGCCGUUA--GUUUGUG- -5' |
|||||||
22865 | 5' | -49.9 | NC_005137.2 | + | 69428 | 0.68 | 0.975383 |
Target: 5'- uUugUUUGcugGCGGCGGCAAUUAuuauCAUu -3' miRNA: 3'- -AugAGACa--UGCCGCCGUUAGUuu--GUG- -5' |
|||||||
22865 | 5' | -49.9 | NC_005137.2 | + | 26700 | 0.68 | 0.966219 |
Target: 5'- gGCgCUGaACGGCGGCGAagAAGC-Cg -3' miRNA: 3'- aUGaGACaUGCCGCCGUUagUUUGuG- -5' |
|||||||
22865 | 5' | -49.9 | NC_005137.2 | + | 121488 | 0.69 | 0.947884 |
Target: 5'- cACgCUGUucgucaacgugacaaGCGGCGGCAgccccgccGUUGAGCACa -3' miRNA: 3'- aUGaGACA---------------UGCCGCCGU--------UAGUUUGUG- -5' |
|||||||
22865 | 5' | -49.9 | NC_005137.2 | + | 88861 | 0.69 | 0.946029 |
Target: 5'- --aUCUGguuccACGGCGGUuccacgcGUCGAACGCa -3' miRNA: 3'- augAGACa----UGCCGCCGu------UAGUUUGUG- -5' |
|||||||
22865 | 5' | -49.9 | NC_005137.2 | + | 96340 | 0.7 | 0.93074 |
Target: 5'- cGCUUgcugGUGCGGUGGCgGGUCGGguaaucgcucGCACa -3' miRNA: 3'- aUGAGa---CAUGCCGCCG-UUAGUU----------UGUG- -5' |
|||||||
22865 | 5' | -49.9 | NC_005137.2 | + | 28288 | 0.7 | 0.925099 |
Target: 5'- cACUUUGUuuaaGCGGCGcCAGUCAAACu- -3' miRNA: 3'- aUGAGACA----UGCCGCcGUUAGUUUGug -5' |
|||||||
22865 | 5' | -49.9 | NC_005137.2 | + | 34967 | 0.7 | 0.919184 |
Target: 5'- cGCUaaGUugGGCGGCGGUgGcuugaAACACc -3' miRNA: 3'- aUGAgaCAugCCGCCGUUAgU-----UUGUG- -5' |
|||||||
22865 | 5' | -49.9 | NC_005137.2 | + | 58469 | 0.71 | 0.906535 |
Target: 5'- cGCUUUGU-CGGCGGCuAAUU--GCGCg -3' miRNA: 3'- aUGAGACAuGCCGCCG-UUAGuuUGUG- -5' |
|||||||
22865 | 5' | -49.9 | NC_005137.2 | + | 103811 | 0.71 | 0.885556 |
Target: 5'- uUGCUggUGUGCGGCGGCGGguugguGCACg -3' miRNA: 3'- -AUGAg-ACAUGCCGCCGUUaguu--UGUG- -5' |
|||||||
22865 | 5' | -49.9 | NC_005137.2 | + | 48462 | 0.71 | 0.878044 |
Target: 5'- gAC-CUGUACGGCaccgugacGGguAUCGAAUACa -3' miRNA: 3'- aUGaGACAUGCCG--------CCguUAGUUUGUG- -5' |
|||||||
22865 | 5' | -49.9 | NC_005137.2 | + | 60483 | 0.72 | 0.845551 |
Target: 5'- cACcgCUGUcgguCGGUGGCcaAAUCAAACACg -3' miRNA: 3'- aUGa-GACAu---GCCGCCG--UUAGUUUGUG- -5' |
|||||||
22865 | 5' | -49.9 | NC_005137.2 | + | 111181 | 0.72 | 0.843829 |
Target: 5'- gGCUUUGUGucgcggcguugcuUGGCGGCAAUCuuuuuggGAGCACc -3' miRNA: 3'- aUGAGACAU-------------GCCGCCGUUAG-------UUUGUG- -5' |
|||||||
22865 | 5' | -49.9 | NC_005137.2 | + | 54410 | 0.72 | 0.836853 |
Target: 5'- --aUCUGUuCGGCGGC-GUCcAACACg -3' miRNA: 3'- augAGACAuGCCGCCGuUAGuUUGUG- -5' |
|||||||
22865 | 5' | -49.9 | NC_005137.2 | + | 100070 | 0.73 | 0.827942 |
Target: 5'- aUGCUUUGUGCcGCGGCGcgC-GGCACg -3' miRNA: 3'- -AUGAGACAUGcCGCCGUuaGuUUGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home