miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22866 3' -55 NC_005137.2 + 11418 0.65 0.932895
Target:  5'- -uUGUUCcggaagugugGCACGUgcucaGCGUGCGUCGcUCu -3'
miRNA:   3'- uuGCAAG----------CGUGCA-----CGCACGCAGC-AGc -5'
22866 3' -55 NC_005137.2 + 5060 0.66 0.92979
Target:  5'- aGACG-UCGUGCGUGCGccGCGacauugagacggcgCGUCGa -3'
miRNA:   3'- -UUGCaAGCGUGCACGCa-CGCa-------------GCAGC- -5'
22866 3' -55 NC_005137.2 + 100207 0.66 0.927671
Target:  5'- cAACGUgUUGCugGUGC--GCGUCGaCGa -3'
miRNA:   3'- -UUGCA-AGCGugCACGcaCGCAGCaGC- -5'
22866 3' -55 NC_005137.2 + 87163 0.66 0.904336
Target:  5'- cGGCGuUUCGCACGUGCaaaucGCGuUCGaCGg -3'
miRNA:   3'- -UUGC-AAGCGUGCACGca---CGC-AGCaGC- -5'
22866 3' -55 NC_005137.2 + 61126 0.67 0.897899
Target:  5'- cGCGUUCguGUugGUGCaaaCGUCGUCGc -3'
miRNA:   3'- uUGCAAG--CGugCACGcacGCAGCAGC- -5'
22866 3' -55 NC_005137.2 + 39286 0.67 0.884318
Target:  5'- uGGCGUacacgUCGCGCGcaaaaaGUGCGUCGUUu -3'
miRNA:   3'- -UUGCA-----AGCGUGCacg---CACGCAGCAGc -5'
22866 3' -55 NC_005137.2 + 114798 0.68 0.862247
Target:  5'- gGGCGgcuugCGCACGU-CGU-CGUCGUCa -3'
miRNA:   3'- -UUGCaa---GCGUGCAcGCAcGCAGCAGc -5'
22866 3' -55 NC_005137.2 + 7015 0.68 0.829881
Target:  5'- cAACGUggCGCACGcGCGUcacgGCcUCGUCGc -3'
miRNA:   3'- -UUGCAa-GCGUGCaCGCA----CGcAGCAGC- -5'
22866 3' -55 NC_005137.2 + 31720 0.69 0.785356
Target:  5'- cACGUUCGCGuCGUuucGCGUGCGUauaGcCGc -3'
miRNA:   3'- uUGCAAGCGU-GCA---CGCACGCAg--CaGC- -5'
22866 3' -55 NC_005137.2 + 96337 0.69 0.775992
Target:  5'- cGGCGcUUGCugGUGCGgugGCGg-GUCGg -3'
miRNA:   3'- -UUGCaAGCGugCACGCa--CGCagCAGC- -5'
22866 3' -55 NC_005137.2 + 78802 0.71 0.67668
Target:  5'- -cCGUUUGCggaGCGggaGCG-GCGUCGUCGg -3'
miRNA:   3'- uuGCAAGCG---UGCa--CGCaCGCAGCAGC- -5'
22866 3' -55 NC_005137.2 + 26633 0.72 0.645732
Target:  5'- uGACGcUCGUACaaGCGUGCG-CGUCGc -3'
miRNA:   3'- -UUGCaAGCGUGcaCGCACGCaGCAGC- -5'
22866 3' -55 NC_005137.2 + 104335 1.06 0.005071
Target:  5'- aAACGUUCGCACGUGCGUGCGUCGUCGu -3'
miRNA:   3'- -UUGCAAGCGUGCACGCACGCAGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.