miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22867 3' -52.9 NC_005137.2 + 103500 1.05 0.006841
Target:  5'- gGAAGCUAACCCACCCUGCAACGCAUUu -3'
miRNA:   3'- -CUUCGAUUGGGUGGGACGUUGCGUAA- -5'
22867 3' -52.9 NC_005137.2 + 46054 0.72 0.694394
Target:  5'- cGAGGUUAugCCGCCgCUGCAcaGCGUg-- -3'
miRNA:   3'- -CUUCGAUugGGUGG-GACGU--UGCGuaa -5'
22867 3' -52.9 NC_005137.2 + 108173 0.71 0.726078
Target:  5'- --cGCgcGCCCGCCCUcgcguuugGCAACGCGc- -3'
miRNA:   3'- cuuCGauUGGGUGGGA--------CGUUGCGUaa -5'
22867 3' -52.9 NC_005137.2 + 79726 0.68 0.850225
Target:  5'- --cGCU-GCCCGCCgcaaaUUGCGACGCAa- -3'
miRNA:   3'- cuuCGAuUGGGUGG-----GACGUUGCGUaa -5'
22867 3' -52.9 NC_005137.2 + 125742 0.66 0.932999
Target:  5'- --uGCuUGACCCGgCUUGCGccGCGCGUUu -3'
miRNA:   3'- cuuCG-AUUGGGUgGGACGU--UGCGUAA- -5'
22867 3' -52.9 NC_005137.2 + 32966 0.66 0.932999
Target:  5'- aAGGCgcugcugGACCCGCUC-GCAGCGCc-- -3'
miRNA:   3'- cUUCGa------UUGGGUGGGaCGUUGCGuaa -5'
22867 3' -52.9 NC_005137.2 + 50296 0.66 0.938196
Target:  5'- --cGC-GGCCCACCCUuGUAAUGUAa- -3'
miRNA:   3'- cuuCGaUUGGGUGGGA-CGUUGCGUaa -5'
22867 3' -52.9 NC_005137.2 + 59944 0.66 0.943128
Target:  5'- uGAGCUGGCgCGCCUcGUugauGCGCAUg -3'
miRNA:   3'- cUUCGAUUGgGUGGGaCGu---UGCGUAa -5'
22867 3' -52.9 NC_005137.2 + 6015 0.66 0.947797
Target:  5'- -cGGCau-CCCGCCCgauuuccaacGCAGCGCAg- -3'
miRNA:   3'- cuUCGauuGGGUGGGa---------CGUUGCGUaa -5'
22867 3' -52.9 NC_005137.2 + 82506 0.66 0.947797
Target:  5'- cGGGC-GACCCGCUUUGCGAUaGCAa- -3'
miRNA:   3'- cUUCGaUUGGGUGGGACGUUG-CGUaa -5'
22867 3' -52.9 NC_005137.2 + 96414 0.66 0.947797
Target:  5'- --cGCU-ACCCGCgCgGCGACGCGc- -3'
miRNA:   3'- cuuCGAuUGGGUGgGaCGUUGCGUaa -5'
22867 3' -52.9 NC_005137.2 + 2006 0.66 0.947797
Target:  5'- -cAGCUcgUgCACgCUGCGGCGCAg- -3'
miRNA:   3'- cuUCGAuuGgGUGgGACGUUGCGUaa -5'
22867 3' -52.9 NC_005137.2 + 2870 0.66 0.947797
Target:  5'- aGggGC-GACCCACuguaCCUGCAAC-CAc- -3'
miRNA:   3'- -CuuCGaUUGGGUG----GGACGUUGcGUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.