miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22869 3' -50.5 NC_005137.2 + 12508 0.66 0.992511
Target:  5'- aCGaUGGaCGGUCGgucuacggcgcACAUGAGCACgCCa- -3'
miRNA:   3'- -GCaACC-GUUAGU-----------UGUACUCGUG-GGcu -5'
22869 3' -50.5 NC_005137.2 + 99590 0.66 0.991375
Target:  5'- ---cGGC-GUCGACGUGcAGCugCCa- -3'
miRNA:   3'- gcaaCCGuUAGUUGUAC-UCGugGGcu -5'
22869 3' -50.5 NC_005137.2 + 111203 0.66 0.991375
Target:  5'- uGgcGGCAAUCuuuuuggGAGCACCgGGu -3'
miRNA:   3'- gCaaCCGUUAGuugua--CUCGUGGgCU- -5'
22869 3' -50.5 NC_005137.2 + 87039 0.66 0.9887
Target:  5'- ---aGGCGAguaCAACAUGGcgguggacGCGCCCGu -3'
miRNA:   3'- gcaaCCGUUa--GUUGUACU--------CGUGGGCu -5'
22869 3' -50.5 NC_005137.2 + 2436 0.66 0.98714
Target:  5'- gCGgUGGC---CGACGUGcccGCGCCCGAc -3'
miRNA:   3'- -GCaACCGuuaGUUGUACu--CGUGGGCU- -5'
22869 3' -50.5 NC_005137.2 + 95584 0.66 0.98714
Target:  5'- uGUUGGCGuuguaGUUAAUgAUGGGCGCgcgCCGAu -3'
miRNA:   3'- gCAACCGU-----UAGUUG-UACUCGUG---GGCU- -5'
22869 3' -50.5 NC_005137.2 + 63632 0.67 0.983529
Target:  5'- ----uGCAAUCAACAUG-GUGCCCa- -3'
miRNA:   3'- gcaacCGUUAGUUGUACuCGUGGGcu -5'
22869 3' -50.5 NC_005137.2 + 65272 0.68 0.971196
Target:  5'- cCGgcGGCGAcggUGACcauUGGGUACCCGAc -3'
miRNA:   3'- -GCaaCCGUUa--GUUGu--ACUCGUGGGCU- -5'
22869 3' -50.5 NC_005137.2 + 97989 0.7 0.929156
Target:  5'- ---gGGCGcgCGGCGUGGguGCGCCCGc -3'
miRNA:   3'- gcaaCCGUuaGUUGUACU--CGUGGGCu -5'
22869 3' -50.5 NC_005137.2 + 18007 0.7 0.928606
Target:  5'- aGUUGGCAuuuagccGUCGgggaugcgacaGCAUGAGCuguuACCCGu -3'
miRNA:   3'- gCAACCGU-------UAGU-----------UGUACUCG----UGGGCu -5'
22869 3' -50.5 NC_005137.2 + 24366 0.71 0.898424
Target:  5'- uGUUGGCAAUaaaCGugGUGAGCAaCUGGu -3'
miRNA:   3'- gCAACCGUUA---GUugUACUCGUgGGCU- -5'
22869 3' -50.5 NC_005137.2 + 104443 0.72 0.853199
Target:  5'- -cUUGGCAGUCGACAcGccgcAGCGCCaCGAc -3'
miRNA:   3'- gcAACCGUUAGUUGUaC----UCGUGG-GCU- -5'
22869 3' -50.5 NC_005137.2 + 27880 0.77 0.624239
Target:  5'- gGUUGGCGAUC-GCGUGgcGGCGCCaCGGg -3'
miRNA:   3'- gCAACCGUUAGuUGUAC--UCGUGG-GCU- -5'
22869 3' -50.5 NC_005137.2 + 98755 1.09 0.007575
Target:  5'- uCGUUGGCAAUCAACAUGAGCACCCGAc -3'
miRNA:   3'- -GCAACCGUUAGUUGUACUCGUGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.