miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22870 3' -49.5 NC_005137.2 + 99763 0.67 0.986337
Target:  5'- uGAGCGcGCACGacGCGGCCAuguucAAGCugGUg -3'
miRNA:   3'- -UUUGC-UGUGU--CGUUGGU-----UUCGugCAg -5'
22870 3' -49.5 NC_005137.2 + 75645 0.67 0.986337
Target:  5'- --uUGGC-CAGCGugGCCAAggGGCACGUg -3'
miRNA:   3'- uuuGCUGuGUCGU--UGGUU--UCGUGCAg -5'
22870 3' -49.5 NC_005137.2 + 71994 0.67 0.986337
Target:  5'- uAGCG-CACGGCGACaaCAAAGUAaGUCa -3'
miRNA:   3'- uUUGCuGUGUCGUUG--GUUUCGUgCAG- -5'
22870 3' -49.5 NC_005137.2 + 9500 0.67 0.986337
Target:  5'- cAACGGCGgGGCuGCCGccGCuuGUCa -3'
miRNA:   3'- uUUGCUGUgUCGuUGGUuuCGugCAG- -5'
22870 3' -49.5 NC_005137.2 + 95753 0.67 0.986337
Target:  5'- cGGugGAUccaauCAGCGGgCGucGCACGUCg -3'
miRNA:   3'- -UUugCUGu----GUCGUUgGUuuCGUGCAG- -5'
22870 3' -49.5 NC_005137.2 + 113692 0.67 0.984494
Target:  5'- -uGCGACGC-GCAcguCgCAcAGCGCGUCa -3'
miRNA:   3'- uuUGCUGUGuCGUu--G-GUuUCGUGCAG- -5'
22870 3' -49.5 NC_005137.2 + 99891 0.67 0.984494
Target:  5'- --cCGACGCaucGGUAACCAAAGCAgCuUCg -3'
miRNA:   3'- uuuGCUGUG---UCGUUGGUUUCGU-GcAG- -5'
22870 3' -49.5 NC_005137.2 + 123069 0.67 0.982467
Target:  5'- -cGCGGCGC-GCAGCCuugguGAGguCGUUg -3'
miRNA:   3'- uuUGCUGUGuCGUUGGu----UUCguGCAG- -5'
22870 3' -49.5 NC_005137.2 + 86189 0.67 0.982254
Target:  5'- --cCGACAaGGCGGCCGAcguguuugaaucuAGCAUGUUg -3'
miRNA:   3'- uuuGCUGUgUCGUUGGUU-------------UCGUGCAG- -5'
22870 3' -49.5 NC_005137.2 + 35530 0.68 0.980247
Target:  5'- -uGCGGCGC-GCAuCCGAccGGUACGUUg -3'
miRNA:   3'- uuUGCUGUGuCGUuGGUU--UCGUGCAG- -5'
22870 3' -49.5 NC_005137.2 + 119573 0.68 0.980247
Target:  5'- aGAGCGACGCAcGCu----GAGCACGUg -3'
miRNA:   3'- -UUUGCUGUGU-CGuugguUUCGUGCAg -5'
22870 3' -49.5 NC_005137.2 + 88022 0.68 0.977824
Target:  5'- --cCGGCGCGGCcaccGCCGAGGCGgGcCa -3'
miRNA:   3'- uuuGCUGUGUCGu---UGGUUUCGUgCaG- -5'
22870 3' -49.5 NC_005137.2 + 81598 0.68 0.977824
Target:  5'- --gUGACGCGGCAGCaguAAGCAgGgUCg -3'
miRNA:   3'- uuuGCUGUGUCGUUGgu-UUCGUgC-AG- -5'
22870 3' -49.5 NC_005137.2 + 31220 0.68 0.977824
Target:  5'- cAGCGGuCGCGGCAcACCAGcuugaacauGGCcGCGUCg -3'
miRNA:   3'- uUUGCU-GUGUCGU-UGGUU---------UCG-UGCAG- -5'
22870 3' -49.5 NC_005137.2 + 128554 0.68 0.975189
Target:  5'- -cGCGAUAgAGUggUCGucgggcgcGGGCACGUCg -3'
miRNA:   3'- uuUGCUGUgUCGuuGGU--------UUCGUGCAG- -5'
22870 3' -49.5 NC_005137.2 + 27894 0.68 0.973502
Target:  5'- uGGCGGCGCcacgggucaucgcccGGCAACCAAuugcGCACG-Cg -3'
miRNA:   3'- uUUGCUGUG---------------UCGUUGGUUu---CGUGCaG- -5'
22870 3' -49.5 NC_005137.2 + 30155 0.68 0.972332
Target:  5'- --uUGACACGGCcGCUAAAGCaucuuACGUUu -3'
miRNA:   3'- uuuGCUGUGUCGuUGGUUUCG-----UGCAG- -5'
22870 3' -49.5 NC_005137.2 + 97984 0.68 0.969245
Target:  5'- aAAACGggcGCGCGGCGugggugcgcccGCCAAGuggccagcguGCACGUCg -3'
miRNA:   3'- -UUUGC---UGUGUCGU-----------UGGUUU----------CGUGCAG- -5'
22870 3' -49.5 NC_005137.2 + 110443 0.69 0.96592
Target:  5'- uGAGCGuGCACAccGCGGCC--GGCGCGUa -3'
miRNA:   3'- -UUUGC-UGUGU--CGUUGGuuUCGUGCAg -5'
22870 3' -49.5 NC_005137.2 + 42349 0.69 0.965574
Target:  5'- -uGCGcaguCugGGCAAaugccccgacaacCCGGAGCGCGUCa -3'
miRNA:   3'- uuUGCu---GugUCGUU-------------GGUUUCGUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.