miRNA display CGI


Results 41 - 60 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22871 3' -58 NC_005137.2 + 42496 0.67 0.727388
Target:  5'- aCGCA-CACGGCGCuUGCUGCGCGgCGAc -3'
miRNA:   3'- cGUGUcGUGUUGCG-GCGGCGCGU-GUU- -5'
22871 3' -58 NC_005137.2 + 82670 0.67 0.727388
Target:  5'- uGCAgAuacGCACGugcCGCCaagGCCGUGCGCGAc -3'
miRNA:   3'- -CGUgU---CGUGUu--GCGG---CGGCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 9501 0.67 0.727388
Target:  5'- -aACGGCGgGGCuGCCGCCGCuuguCACGu -3'
miRNA:   3'- cgUGUCGUgUUG-CGGCGGCGc---GUGUu -5'
22871 3' -58 NC_005137.2 + 124962 0.67 0.717376
Target:  5'- aCGCGGCGCcggugauggGGCGCugCGCUGCGUugGAa -3'
miRNA:   3'- cGUGUCGUG---------UUGCG--GCGGCGCGugUU- -5'
22871 3' -58 NC_005137.2 + 34863 0.67 0.717376
Target:  5'- cGCACGGCggGCAACGCga-UGCGCAUGGg -3'
miRNA:   3'- -CGUGUCG--UGUUGCGgcgGCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 98368 0.67 0.717376
Target:  5'- uGCGcCGGUuuGGCGCCGUCGCG-ACGGg -3'
miRNA:   3'- -CGU-GUCGugUUGCGGCGGCGCgUGUU- -5'
22871 3' -58 NC_005137.2 + 106853 0.67 0.69714
Target:  5'- aCGCAGUAC-GCGCagauugugGCCGCGUugGAa -3'
miRNA:   3'- cGUGUCGUGuUGCGg-------CGGCGCGugUU- -5'
22871 3' -58 NC_005137.2 + 102955 0.67 0.707291
Target:  5'- gGCGCAuCcCAGCGCgCGUCGCGcCACGu -3'
miRNA:   3'- -CGUGUcGuGUUGCG-GCGGCGC-GUGUu -5'
22871 3' -58 NC_005137.2 + 54652 0.67 0.707291
Target:  5'- uCGCGGCGCAAuaauaaacaguCGCuCGgUGCGCGCGGg -3'
miRNA:   3'- cGUGUCGUGUU-----------GCG-GCgGCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 85327 0.67 0.707291
Target:  5'- aGCAUc-CGCGuugGCGCCGCCGCcCACGu -3'
miRNA:   3'- -CGUGucGUGU---UGCGGCGGCGcGUGUu -5'
22871 3' -58 NC_005137.2 + 65421 0.67 0.69714
Target:  5'- -aGCGGCACccAAUGCCGuugcCCGUGUACAc -3'
miRNA:   3'- cgUGUCGUG--UUGCGGC----GGCGCGUGUu -5'
22871 3' -58 NC_005137.2 + 126 0.67 0.69714
Target:  5'- -uGCGGCGCGu--CCGCgGCGUACAAu -3'
miRNA:   3'- cgUGUCGUGUugcGGCGgCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 42892 0.67 0.67668
Target:  5'- cGUugAGgGCGuguuuucacacGCGUCGCCGUGCAUg- -3'
miRNA:   3'- -CGugUCgUGU-----------UGCGGCGGCGCGUGuu -5'
22871 3' -58 NC_005137.2 + 58212 0.67 0.67668
Target:  5'- -gGCAGCGC-GCGCCGCCaacGCGUGgGu -3'
miRNA:   3'- cgUGUCGUGuUGCGGCGG---CGCGUgUu -5'
22871 3' -58 NC_005137.2 + 123102 0.67 0.67668
Target:  5'- gGCAaauGCGCAauggagcuGCGCCGgUGUGCACGu -3'
miRNA:   3'- -CGUgu-CGUGU--------UGCGGCgGCGCGUGUu -5'
22871 3' -58 NC_005137.2 + 9745 0.67 0.686933
Target:  5'- uGCACcuGCACuuguUGCCGCauguugagauugUGCGCACAAg -3'
miRNA:   3'- -CGUGu-CGUGuu--GCGGCG------------GCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 25286 0.67 0.686933
Target:  5'- aCACAGUGCGggauccauACGCUGUCGCuGUACAu -3'
miRNA:   3'- cGUGUCGUGU--------UGCGGCGGCG-CGUGUu -5'
22871 3' -58 NC_005137.2 + 17300 0.67 0.686933
Target:  5'- uGCGCAGgACAuugacGCGCUGUgcgaCGUGCGCGu -3'
miRNA:   3'- -CGUGUCgUGU-----UGCGGCG----GCGCGUGUu -5'
22871 3' -58 NC_005137.2 + 9602 0.67 0.68591
Target:  5'- aGC-CAGCauGCAGCGUCGCuugcaagCGUGCACGc -3'
miRNA:   3'- -CGuGUCG--UGUUGCGGCG-------GCGCGUGUu -5'
22871 3' -58 NC_005137.2 + 28179 0.67 0.686933
Target:  5'- cGCAauaaGGCgACAGCGUCGC-GUGUACAAa -3'
miRNA:   3'- -CGUg---UCG-UGUUGCGGCGgCGCGUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.