miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22871 5' -54.1 NC_005137.2 + 97268 1.09 0.003533
Target:  5'- uUUUCGGUACAACGCCGCCGCAGUAGCc -3'
miRNA:   3'- -AAAGCCAUGUUGCGGCGGCGUCAUCG- -5'
22871 5' -54.1 NC_005137.2 + 66209 0.74 0.541094
Target:  5'- aUUCGGUGCAcAUGuuGgCGCGGcUAGCg -3'
miRNA:   3'- aAAGCCAUGU-UGCggCgGCGUC-AUCG- -5'
22871 5' -54.1 NC_005137.2 + 67348 0.73 0.581522
Target:  5'- gUUCGGUgaccgcgggcGCGACGCgaugcgcgaccguCGCCGCGGcGGCg -3'
miRNA:   3'- aAAGCCA----------UGUUGCG-------------GCGGCGUCaUCG- -5'
22871 5' -54.1 NC_005137.2 + 20556 0.72 0.624642
Target:  5'- --cCGuGUAC-GCGCCgGCCGCGGUGuGCa -3'
miRNA:   3'- aaaGC-CAUGuUGCGG-CGGCGUCAU-CG- -5'
22871 5' -54.1 NC_005137.2 + 123082 0.72 0.645749
Target:  5'- -aUUGuGUACAACGCCGCgUGCAGcacUAGUu -3'
miRNA:   3'- aaAGC-CAUGUUGCGGCG-GCGUC---AUCG- -5'
22871 5' -54.1 NC_005137.2 + 63010 0.71 0.677299
Target:  5'- --aUGGUGCGGCGCCGgCGUGucGGCa -3'
miRNA:   3'- aaaGCCAUGUUGCGGCgGCGUcaUCG- -5'
22871 5' -54.1 NC_005137.2 + 117558 0.71 0.708494
Target:  5'- -gUUGGUguaccgGCAaaguGCGCCGCCGguGcGGCu -3'
miRNA:   3'- aaAGCCA------UGU----UGCGGCGGCguCaUCG- -5'
22871 5' -54.1 NC_005137.2 + 98372 0.71 0.708494
Target:  5'- --cCGGUuuGGCGCCGUCGCGacgGGCu -3'
miRNA:   3'- aaaGCCAugUUGCGGCGGCGUca-UCG- -5'
22871 5' -54.1 NC_005137.2 + 34589 0.71 0.708494
Target:  5'- --gCGGcggGC-GCGUCGCCGCgcgGGUAGCg -3'
miRNA:   3'- aaaGCCa--UGuUGCGGCGGCG---UCAUCG- -5'
22871 5' -54.1 NC_005137.2 + 110027 0.7 0.739069
Target:  5'- gUUUGcGUGCAagcgcggcaaaACGCgCGCCGCAGgcAGCa -3'
miRNA:   3'- aAAGC-CAUGU-----------UGCG-GCGGCGUCa-UCG- -5'
22871 5' -54.1 NC_005137.2 + 58693 0.7 0.758973
Target:  5'- gUUCGG-ACAGUGgCGCCGCGuUGGCg -3'
miRNA:   3'- aAAGCCaUGUUGCgGCGGCGUcAUCG- -5'
22871 5' -54.1 NC_005137.2 + 97228 0.7 0.758973
Target:  5'- -gUUGGcacagcACAACGCCGCCGCGcacaaUGGCc -3'
miRNA:   3'- aaAGCCa-----UGUUGCGGCGGCGUc----AUCG- -5'
22871 5' -54.1 NC_005137.2 + 112444 0.7 0.758973
Target:  5'- -gUCGGccgUugGACGCgGCgGCAGgaugGGCg -3'
miRNA:   3'- aaAGCC---AugUUGCGgCGgCGUCa---UCG- -5'
22871 5' -54.1 NC_005137.2 + 130527 0.7 0.768751
Target:  5'- ----uGUACAACacgcugggcaGCCGCCGCGGcGGCa -3'
miRNA:   3'- aaagcCAUGUUG----------CGGCGGCGUCaUCG- -5'
22871 5' -54.1 NC_005137.2 + 52226 0.7 0.7784
Target:  5'- --aCGGcACGuauacuCGUCGCCGCAGaAGCu -3'
miRNA:   3'- aaaGCCaUGUu-----GCGGCGGCGUCaUCG- -5'
22871 5' -54.1 NC_005137.2 + 2572 0.69 0.787909
Target:  5'- ---aGGUGCAGCGCauuaaCGCAgGUGGCg -3'
miRNA:   3'- aaagCCAUGUUGCGgcg--GCGU-CAUCG- -5'
22871 5' -54.1 NC_005137.2 + 63614 0.69 0.806471
Target:  5'- uUUUUGGaacaaaaauuCAACGCCGCCGCGGcgacGGUc -3'
miRNA:   3'- -AAAGCCau--------GUUGCGGCGGCGUCa---UCG- -5'
22871 5' -54.1 NC_005137.2 + 27311 0.69 0.815505
Target:  5'- --aCGGUgGCGGCGgCGUUuuggGCAGUGGCg -3'
miRNA:   3'- aaaGCCA-UGUUGCgGCGG----CGUCAUCG- -5'
22871 5' -54.1 NC_005137.2 + 130188 0.69 0.824361
Target:  5'- --cUGGUGUAAacgUGCCGCCGCcaccuGUAGCg -3'
miRNA:   3'- aaaGCCAUGUU---GCGGCGGCGu----CAUCG- -5'
22871 5' -54.1 NC_005137.2 + 31676 0.68 0.857846
Target:  5'- --gCGG-ACGACaCCGCCGC-GUGGUu -3'
miRNA:   3'- aaaGCCaUGUUGcGGCGGCGuCAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.