miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22874 3' -55.1 NC_005137.2 + 103577 0.66 0.907971
Target:  5'- aCAAGCgcgugGGCCAgcuguuacagcGCUGCAgcggccgcuacuuuUGGCcGGACGg -3'
miRNA:   3'- -GUUUGa----CCGGU-----------UGGCGU--------------ACCG-CCUGU- -5'
22874 3' -55.1 NC_005137.2 + 48450 0.66 0.903527
Target:  5'- aCAAACUGGCCuGACCuGUAcGGCaccguGACGg -3'
miRNA:   3'- -GUUUGACCGG-UUGG-CGUaCCGc----CUGU- -5'
22874 3' -55.1 NC_005137.2 + 5154 0.66 0.903527
Target:  5'- gAAGCUGGCUGGCUagGgGUGGCuGGCu -3'
miRNA:   3'- gUUUGACCGGUUGG--CgUACCGcCUGu -5'
22874 3' -55.1 NC_005137.2 + 5126 0.66 0.903527
Target:  5'- gAAGCUGGCUGGCUagGgGUGGCuGGCu -3'
miRNA:   3'- gUUUGACCGGUUGG--CgUACCGcCUGu -5'
22874 3' -55.1 NC_005137.2 + 88028 0.66 0.890168
Target:  5'- -----cGGCC-ACCGCcgaGGCGGGCc -3'
miRNA:   3'- guuugaCCGGuUGGCGua-CCGCCUGu -5'
22874 3' -55.1 NC_005137.2 + 33001 0.67 0.86063
Target:  5'- gCAcGCUGGCC-ACU---UGGCGGGCGc -3'
miRNA:   3'- -GUuUGACCGGuUGGcguACCGCCUGU- -5'
22874 3' -55.1 NC_005137.2 + 34856 0.68 0.800894
Target:  5'- ----aUGGU--ACCGCAcGGCGGGCAa -3'
miRNA:   3'- guuugACCGguUGGCGUaCCGCCUGU- -5'
22874 3' -55.1 NC_005137.2 + 24296 0.68 0.791649
Target:  5'- uCAAACggcGGCguuugCGGCUGCggugGUGGCGGGCAc -3'
miRNA:   3'- -GUUUGa--CCG-----GUUGGCG----UACCGCCUGU- -5'
22874 3' -55.1 NC_005137.2 + 73810 0.69 0.763045
Target:  5'- gCAggUUGGCCAAaaaCGCGUcGCGGuCAc -3'
miRNA:   3'- -GUuuGACCGGUUg--GCGUAcCGCCuGU- -5'
22874 3' -55.1 NC_005137.2 + 1004 0.69 0.763045
Target:  5'- uCAAACUcGUCAGCCGCGccGCGaGACAa -3'
miRNA:   3'- -GUUUGAcCGGUUGGCGUacCGC-CUGU- -5'
22874 3' -55.1 NC_005137.2 + 99787 0.69 0.753253
Target:  5'- uCAAGCUGGUgugcgCGACCGC-UGGUacaaGGGCGa -3'
miRNA:   3'- -GUUUGACCG-----GUUGGCGuACCG----CCUGU- -5'
22874 3' -55.1 NC_005137.2 + 46615 0.7 0.692491
Target:  5'- uGggUUGGCgGgacaguuuACCGcCAUGGUGGACAg -3'
miRNA:   3'- gUuuGACCGgU--------UGGC-GUACCGCCUGU- -5'
22874 3' -55.1 NC_005137.2 + 27877 0.7 0.692491
Target:  5'- gCGggUUGG-CGAUCGCGUGGCGG-CGc -3'
miRNA:   3'- -GUuuGACCgGUUGGCGUACCGCCuGU- -5'
22874 3' -55.1 NC_005137.2 + 130533 0.71 0.629811
Target:  5'- aCAcGCUGGgCAGCCGCcgcGGCGG-CAu -3'
miRNA:   3'- -GUuUGACCgGUUGGCGua-CCGCCuGU- -5'
22874 3' -55.1 NC_005137.2 + 130017 0.72 0.598375
Target:  5'- uGAAUUGGCagcaGACCGUAUGGCGauGCAa -3'
miRNA:   3'- gUUUGACCGg---UUGGCGUACCGCc-UGU- -5'
22874 3' -55.1 NC_005137.2 + 31494 0.73 0.506228
Target:  5'- aAAACUugcgcGGCCAGCCGCAauuUGacaaGCGGACGg -3'
miRNA:   3'- gUUUGA-----CCGGUUGGCGU---AC----CGCCUGU- -5'
22874 3' -55.1 NC_005137.2 + 118632 0.74 0.463368
Target:  5'- cCAAACUGGaCAACCGCAccgugcuauggaaGGUGGACGa -3'
miRNA:   3'- -GUUUGACCgGUUGGCGUa------------CCGCCUGU- -5'
22874 3' -55.1 NC_005137.2 + 87340 1.03 0.006726
Target:  5'- -cAGCUGGCCAACCGCAUGGCGGACAu -3'
miRNA:   3'- guUUGACCGGUUGGCGUACCGCCUGU- -5'
22874 3' -55.1 NC_005137.2 + 83657 1.09 0.002784
Target:  5'- aCAAACUGGCCAACCGCAUGGCGGACAu -3'
miRNA:   3'- -GUUUGACCGGUUGGCGUACCGCCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.