miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22874 5' -52.6 NC_005137.2 + 23705 0.73 0.614164
Target:  5'- --aACUAA-CCGGCCAAUCCACAAa- -3'
miRNA:   3'- caaUGGUUcGGCCGGUUGGGUGUUaa -5'
22874 5' -52.6 NC_005137.2 + 26935 0.71 0.772264
Target:  5'- ----aCGAGCCGGCCAGCaCgACGAa- -3'
miRNA:   3'- caaugGUUCGGCCGGUUG-GgUGUUaa -5'
22874 5' -52.6 NC_005137.2 + 29449 0.69 0.862579
Target:  5'- --gGCCAAaUUGGCCAAUCCACAc-- -3'
miRNA:   3'- caaUGGUUcGGCCGGUUGGGUGUuaa -5'
22874 5' -52.6 NC_005137.2 + 37739 0.7 0.791765
Target:  5'- --aACCGgcGGCUGGCCGcagacCCCGCAGUg -3'
miRNA:   3'- caaUGGU--UCGGCCGGUu----GGGUGUUAa -5'
22874 5' -52.6 NC_005137.2 + 53703 0.68 0.899607
Target:  5'- ----aCGAGCCGGCCGuuuuGgCCACAAc- -3'
miRNA:   3'- caaugGUUCGGCCGGU----UgGGUGUUaa -5'
22874 5' -52.6 NC_005137.2 + 59504 0.67 0.918765
Target:  5'- --cGCCAgacgAGCCGGCUGACgagUCGCGGUUg -3'
miRNA:   3'- caaUGGU----UCGGCCGGUUG---GGUGUUAA- -5'
22874 5' -52.6 NC_005137.2 + 63057 0.66 0.954199
Target:  5'- uGUUACCAAuGCCaaucaaGGCgGACCCgGCGAc- -3'
miRNA:   3'- -CAAUGGUU-CGG------CCGgUUGGG-UGUUaa -5'
22874 5' -52.6 NC_005137.2 + 65778 0.67 0.932374
Target:  5'- cGUUugCAaacgggucaaacaagGGuUCGGCCAGCCCGCuuUUa -3'
miRNA:   3'- -CAAugGU---------------UC-GGCCGGUUGGGUGuuAA- -5'
22874 5' -52.6 NC_005137.2 + 68440 0.69 0.846103
Target:  5'- ----aCGAGUCGGCgCAGCCCAUGAg- -3'
miRNA:   3'- caaugGUUCGGCCG-GUUGGGUGUUaa -5'
22874 5' -52.6 NC_005137.2 + 71709 0.71 0.731676
Target:  5'- -aUACCGAGUCGGCCGuggacgaccuGCCCAg---- -3'
miRNA:   3'- caAUGGUUCGGCCGGU----------UGGGUguuaa -5'
22874 5' -52.6 NC_005137.2 + 83697 1.06 0.00644
Target:  5'- uGUUACCAAGCCGGCCAACCCACAAUUa -3'
miRNA:   3'- -CAAUGGUUCGGCCGGUUGGGUGUUAA- -5'
22874 5' -52.6 NC_005137.2 + 88837 0.7 0.791765
Target:  5'- --gACgCGAcGCUGGCCAACuCCACGAUc -3'
miRNA:   3'- caaUG-GUU-CGGCCGGUUG-GGUGUUAa -5'
22874 5' -52.6 NC_005137.2 + 95479 0.68 0.885539
Target:  5'- uGUUGCCcacGGCCGGCCGGa--ACGAUUg -3'
miRNA:   3'- -CAAUGGu--UCGGCCGGUUgggUGUUAA- -5'
22874 5' -52.6 NC_005137.2 + 100996 0.67 0.935536
Target:  5'- -cUGCCAcGCCuguccaaccgcGGCCGuacauggcaacGCCCACAAUa -3'
miRNA:   3'- caAUGGUuCGG-----------CCGGU-----------UGGGUGUUAa -5'
22874 5' -52.6 NC_005137.2 + 103107 0.72 0.693812
Target:  5'- gGUUGCCGGgcgaugacccguggcGCCGccacgcgaucGCCAACCCGCAAUg -3'
miRNA:   3'- -CAAUGGUU---------------CGGC----------CGGUUGGGUGUUAa -5'
22874 5' -52.6 NC_005137.2 + 129131 0.67 0.918164
Target:  5'- uUUACCAAaCCGGCCAuugaucacuugagGCgCCGCGAc- -3'
miRNA:   3'- cAAUGGUUcGGCCGGU-------------UG-GGUGUUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.