miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22875 3' -56.6 NC_005137.2 + 18406 0.66 0.856996
Target:  5'- uUGGGCGAGaGCUUauGAACGGcGGCUg -3'
miRNA:   3'- uACUCGUUCgCGGGcuUUUGCC-CCGG- -5'
22875 3' -56.6 NC_005137.2 + 124957 0.66 0.840888
Target:  5'- gAUGAacGC-GGCGCCgGu-GAUGGGGCg -3'
miRNA:   3'- -UACU--CGuUCGCGGgCuuUUGCCCCGg -5'
22875 3' -56.6 NC_005137.2 + 9481 0.66 0.840062
Target:  5'- -aGAGCGGGUuguuuguGCUCaAcgGCGGGGCUg -3'
miRNA:   3'- uaCUCGUUCG-------CGGGcUuuUGCCCCGG- -5'
22875 3' -56.6 NC_005137.2 + 5558 0.66 0.824
Target:  5'- -aGAGCAAuaacGCGCUCGcAAugGGagacguguauGGCCg -3'
miRNA:   3'- uaCUCGUU----CGCGGGCuUUugCC----------CCGG- -5'
22875 3' -56.6 NC_005137.2 + 11761 0.67 0.800983
Target:  5'- gGUGAGCGuuuauaaaggcuggaAGUGCgcagUCGcAAGGCGGGGCa -3'
miRNA:   3'- -UACUCGU---------------UCGCG----GGC-UUUUGCCCCGg -5'
22875 3' -56.6 NC_005137.2 + 12690 0.67 0.788139
Target:  5'- uUGAGCAGcGCGUCgGA--ACGGcGcGCCa -3'
miRNA:   3'- uACUCGUU-CGCGGgCUuuUGCC-C-CGG- -5'
22875 3' -56.6 NC_005137.2 + 110441 0.67 0.77879
Target:  5'- gGUGAGCGugcacaccGCGgCCGGcgcguacACGGGGUCa -3'
miRNA:   3'- -UACUCGUu-------CGCgGGCUuu-----UGCCCCGG- -5'
22875 3' -56.6 NC_005137.2 + 26451 0.67 0.77879
Target:  5'- aGUGA-CGAGUGCUuccgCGAcAACGuGGGCCg -3'
miRNA:   3'- -UACUcGUUCGCGG----GCUuUUGC-CCCGG- -5'
22875 3' -56.6 NC_005137.2 + 33248 0.67 0.77879
Target:  5'- -cGcAGCGAGCGCCUGGcuguuCGaGGCCc -3'
miRNA:   3'- uaC-UCGUUCGCGGGCUuuu--GCcCCGG- -5'
22875 3' -56.6 NC_005137.2 + 86951 0.69 0.67944
Target:  5'- uUGAGCucaucaacGCGUCUGAAAugcCGGcGGCCa -3'
miRNA:   3'- uACUCGuu------CGCGGGCUUUu--GCC-CCGG- -5'
22875 3' -56.6 NC_005137.2 + 26140 0.69 0.67944
Target:  5'- cUGAGCAuugcaacGCGCaaaUGAAAACGGGuCCg -3'
miRNA:   3'- uACUCGUu------CGCGg--GCUUUUGCCCcGG- -5'
22875 3' -56.6 NC_005137.2 + 2110 0.7 0.627666
Target:  5'- aAUGAagGAGCGCUCGAAAGCGcguuaguGGCCa -3'
miRNA:   3'- -UACUcgUUCGCGGGCUUUUGCc------CCGG- -5'
22875 3' -56.6 NC_005137.2 + 4005 0.75 0.345374
Target:  5'- -cGGGCAaaccaAGCGCuuGccuGAUGGGGCCa -3'
miRNA:   3'- uaCUCGU-----UCGCGggCuu-UUGCCCCGG- -5'
22875 3' -56.6 NC_005137.2 + 83254 1.09 0.002042
Target:  5'- uAUGAGCAAGCGCCCGAAAACGGGGCCc -3'
miRNA:   3'- -UACUCGUUCGCGGGCUUUUGCCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.