Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22875 | 3' | -56.6 | NC_005137.2 | + | 18406 | 0.66 | 0.856996 |
Target: 5'- uUGGGCGAGaGCUUauGAACGGcGGCUg -3' miRNA: 3'- uACUCGUUCgCGGGcuUUUGCC-CCGG- -5' |
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22875 | 3' | -56.6 | NC_005137.2 | + | 124957 | 0.66 | 0.840888 |
Target: 5'- gAUGAacGC-GGCGCCgGu-GAUGGGGCg -3' miRNA: 3'- -UACU--CGuUCGCGGgCuuUUGCCCCGg -5' |
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22875 | 3' | -56.6 | NC_005137.2 | + | 9481 | 0.66 | 0.840062 |
Target: 5'- -aGAGCGGGUuguuuguGCUCaAcgGCGGGGCUg -3' miRNA: 3'- uaCUCGUUCG-------CGGGcUuuUGCCCCGG- -5' |
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22875 | 3' | -56.6 | NC_005137.2 | + | 5558 | 0.66 | 0.824 |
Target: 5'- -aGAGCAAuaacGCGCUCGcAAugGGagacguguauGGCCg -3' miRNA: 3'- uaCUCGUU----CGCGGGCuUUugCC----------CCGG- -5' |
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22875 | 3' | -56.6 | NC_005137.2 | + | 11761 | 0.67 | 0.800983 |
Target: 5'- gGUGAGCGuuuauaaaggcuggaAGUGCgcagUCGcAAGGCGGGGCa -3' miRNA: 3'- -UACUCGU---------------UCGCG----GGC-UUUUGCCCCGg -5' |
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22875 | 3' | -56.6 | NC_005137.2 | + | 12690 | 0.67 | 0.788139 |
Target: 5'- uUGAGCAGcGCGUCgGA--ACGGcGcGCCa -3' miRNA: 3'- uACUCGUU-CGCGGgCUuuUGCC-C-CGG- -5' |
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22875 | 3' | -56.6 | NC_005137.2 | + | 110441 | 0.67 | 0.77879 |
Target: 5'- gGUGAGCGugcacaccGCGgCCGGcgcguacACGGGGUCa -3' miRNA: 3'- -UACUCGUu-------CGCgGGCUuu-----UGCCCCGG- -5' |
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22875 | 3' | -56.6 | NC_005137.2 | + | 26451 | 0.67 | 0.77879 |
Target: 5'- aGUGA-CGAGUGCUuccgCGAcAACGuGGGCCg -3' miRNA: 3'- -UACUcGUUCGCGG----GCUuUUGC-CCCGG- -5' |
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22875 | 3' | -56.6 | NC_005137.2 | + | 33248 | 0.67 | 0.77879 |
Target: 5'- -cGcAGCGAGCGCCUGGcuguuCGaGGCCc -3' miRNA: 3'- uaC-UCGUUCGCGGGCUuuu--GCcCCGG- -5' |
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22875 | 3' | -56.6 | NC_005137.2 | + | 86951 | 0.69 | 0.67944 |
Target: 5'- uUGAGCucaucaacGCGUCUGAAAugcCGGcGGCCa -3' miRNA: 3'- uACUCGuu------CGCGGGCUUUu--GCC-CCGG- -5' |
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22875 | 3' | -56.6 | NC_005137.2 | + | 26140 | 0.69 | 0.67944 |
Target: 5'- cUGAGCAuugcaacGCGCaaaUGAAAACGGGuCCg -3' miRNA: 3'- uACUCGUu------CGCGg--GCUUUUGCCCcGG- -5' |
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22875 | 3' | -56.6 | NC_005137.2 | + | 2110 | 0.7 | 0.627666 |
Target: 5'- aAUGAagGAGCGCUCGAAAGCGcguuaguGGCCa -3' miRNA: 3'- -UACUcgUUCGCGGGCUUUUGCc------CCGG- -5' |
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22875 | 3' | -56.6 | NC_005137.2 | + | 4005 | 0.75 | 0.345374 |
Target: 5'- -cGGGCAaaccaAGCGCuuGccuGAUGGGGCCa -3' miRNA: 3'- uaCUCGU-----UCGCGggCuu-UUGCCCCGG- -5' |
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22875 | 3' | -56.6 | NC_005137.2 | + | 83254 | 1.09 | 0.002042 |
Target: 5'- uAUGAGCAAGCGCCCGAAAACGGGGCCc -3' miRNA: 3'- -UACUCGUUCGCGGGCUUUUGCCCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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