miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22875 5' -58.4 NC_005137.2 + 58212 0.66 0.800922
Target:  5'- gGCAGCGCGcGcCGccAACGcguGGGUGACCg- -3'
miRNA:   3'- -UGUCGCGC-CaGU--UUGU---CCCGCUGGgc -5'
22875 5' -58.4 NC_005137.2 + 61353 0.66 0.800922
Target:  5'- gGCAcGCGCucugcGUCAAAU-GGGCGGCCgGc -3'
miRNA:   3'- -UGU-CGCGc----CAGUUUGuCCCGCUGGgC- -5'
22875 5' -58.4 NC_005137.2 + 50276 0.66 0.782888
Target:  5'- gAUAGcCGCGGUCAGuuuuucGCGGCCCa -3'
miRNA:   3'- -UGUC-GCGCCAGUUugucc-CGCUGGGc -5'
22875 5' -58.4 NC_005137.2 + 63640 0.66 0.782888
Target:  5'- cGCGGCGaCGGUCGcGCAucGCGucgcGCCCGc -3'
miRNA:   3'- -UGUCGC-GCCAGUuUGUccCGC----UGGGC- -5'
22875 5' -58.4 NC_005137.2 + 5869 0.66 0.76432
Target:  5'- gGCGGUGCauuGUCAAgacguucgaGCGGcGCGGCCCGc -3'
miRNA:   3'- -UGUCGCGc--CAGUU---------UGUCcCGCUGGGC- -5'
22875 5' -58.4 NC_005137.2 + 80350 0.67 0.735625
Target:  5'- cGCugaaGCGGUCAAAUaugAGGGCGGCaaGg -3'
miRNA:   3'- -UGucg-CGCCAGUUUG---UCCCGCUGggC- -5'
22875 5' -58.4 NC_005137.2 + 65773 0.67 0.716037
Target:  5'- gACGGCGUuugcaaacgGGUCAAACaAGGGUucggccaGCCCGc -3'
miRNA:   3'- -UGUCGCG---------CCAGUUUG-UCCCGc------UGGGC- -5'
22875 5' -58.4 NC_005137.2 + 82487 0.67 0.706132
Target:  5'- uCGGCGUuGGUgccuAACccGGGCGACCCGc -3'
miRNA:   3'- uGUCGCG-CCAgu--UUGu-CCCGCUGGGC- -5'
22875 5' -58.4 NC_005137.2 + 74433 0.68 0.645716
Target:  5'- gAUAGgGCgGGUCGu-CGGGGCGuuugaauguGCCCGg -3'
miRNA:   3'- -UGUCgCG-CCAGUuuGUCCCGC---------UGGGC- -5'
22875 5' -58.4 NC_005137.2 + 7186 0.69 0.635561
Target:  5'- uGCAGCGCauuUCGAACcGGcGCGugCCGu -3'
miRNA:   3'- -UGUCGCGcc-AGUUUGuCC-CGCugGGC- -5'
22875 5' -58.4 NC_005137.2 + 100016 0.69 0.625404
Target:  5'- aGCGuGCGCGGUU-----GGGaCGACCCGg -3'
miRNA:   3'- -UGU-CGCGCCAGuuuguCCC-GCUGGGC- -5'
22875 5' -58.4 NC_005137.2 + 30007 0.69 0.584899
Target:  5'- uACGGcCGCGGUUGGACAGGcGUGGCa-- -3'
miRNA:   3'- -UGUC-GCGCCAGUUUGUCC-CGCUGggc -5'
22875 5' -58.4 NC_005137.2 + 7317 0.7 0.554847
Target:  5'- gGCAGgaUGCGGUCAAAguGcuGGCGcCCCGc -3'
miRNA:   3'- -UGUC--GCGCCAGUUUguC--CCGCuGGGC- -5'
22875 5' -58.4 NC_005137.2 + 28089 0.72 0.431781
Target:  5'- cGCAGCGCGG-CcuGCcGGGUGACaCCa -3'
miRNA:   3'- -UGUCGCGCCaGuuUGuCCCGCUG-GGc -5'
22875 5' -58.4 NC_005137.2 + 125030 0.73 0.36442
Target:  5'- uGCGGCGUGGcgCAGGCAacggagccGGGCGGCgCGg -3'
miRNA:   3'- -UGUCGCGCCa-GUUUGU--------CCCGCUGgGC- -5'
22875 5' -58.4 NC_005137.2 + 83290 1.07 0.001966
Target:  5'- aACAGCGCGGUCAAACAGGGCGACCCGc -3'
miRNA:   3'- -UGUCGCGCCAGUUUGUCCCGCUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.