Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22875 | 5' | -58.4 | NC_005137.2 | + | 125030 | 0.73 | 0.36442 |
Target: 5'- uGCGGCGUGGcgCAGGCAacggagccGGGCGGCgCGg -3' miRNA: 3'- -UGUCGCGCCa-GUUUGU--------CCCGCUGgGC- -5' |
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22875 | 5' | -58.4 | NC_005137.2 | + | 100016 | 0.69 | 0.625404 |
Target: 5'- aGCGuGCGCGGUU-----GGGaCGACCCGg -3' miRNA: 3'- -UGU-CGCGCCAGuuuguCCC-GCUGGGC- -5' |
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22875 | 5' | -58.4 | NC_005137.2 | + | 83290 | 1.07 | 0.001966 |
Target: 5'- aACAGCGCGGUCAAACAGGGCGACCCGc -3' miRNA: 3'- -UGUCGCGCCAGUUUGUCCCGCUGGGC- -5' |
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22875 | 5' | -58.4 | NC_005137.2 | + | 82487 | 0.67 | 0.706132 |
Target: 5'- uCGGCGUuGGUgccuAACccGGGCGACCCGc -3' miRNA: 3'- uGUCGCG-CCAgu--UUGu-CCCGCUGGGC- -5' |
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22875 | 5' | -58.4 | NC_005137.2 | + | 80350 | 0.67 | 0.735625 |
Target: 5'- cGCugaaGCGGUCAAAUaugAGGGCGGCaaGg -3' miRNA: 3'- -UGucg-CGCCAGUUUG---UCCCGCUGggC- -5' |
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22875 | 5' | -58.4 | NC_005137.2 | + | 74433 | 0.68 | 0.645716 |
Target: 5'- gAUAGgGCgGGUCGu-CGGGGCGuuugaauguGCCCGg -3' miRNA: 3'- -UGUCgCG-CCAGUuuGUCCCGC---------UGGGC- -5' |
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22875 | 5' | -58.4 | NC_005137.2 | + | 65773 | 0.67 | 0.716037 |
Target: 5'- gACGGCGUuugcaaacgGGUCAAACaAGGGUucggccaGCCCGc -3' miRNA: 3'- -UGUCGCG---------CCAGUUUG-UCCCGc------UGGGC- -5' |
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22875 | 5' | -58.4 | NC_005137.2 | + | 63640 | 0.66 | 0.782888 |
Target: 5'- cGCGGCGaCGGUCGcGCAucGCGucgcGCCCGc -3' miRNA: 3'- -UGUCGC-GCCAGUuUGUccCGC----UGGGC- -5' |
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22875 | 5' | -58.4 | NC_005137.2 | + | 61353 | 0.66 | 0.800922 |
Target: 5'- gGCAcGCGCucugcGUCAAAU-GGGCGGCCgGc -3' miRNA: 3'- -UGU-CGCGc----CAGUUUGuCCCGCUGGgC- -5' |
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22875 | 5' | -58.4 | NC_005137.2 | + | 58212 | 0.66 | 0.800922 |
Target: 5'- gGCAGCGCGcGcCGccAACGcguGGGUGACCg- -3' miRNA: 3'- -UGUCGCGC-CaGU--UUGU---CCCGCUGGgc -5' |
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22875 | 5' | -58.4 | NC_005137.2 | + | 50276 | 0.66 | 0.782888 |
Target: 5'- gAUAGcCGCGGUCAGuuuuucGCGGCCCa -3' miRNA: 3'- -UGUC-GCGCCAGUUugucc-CGCUGGGc -5' |
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22875 | 5' | -58.4 | NC_005137.2 | + | 30007 | 0.69 | 0.584899 |
Target: 5'- uACGGcCGCGGUUGGACAGGcGUGGCa-- -3' miRNA: 3'- -UGUC-GCGCCAGUUUGUCC-CGCUGggc -5' |
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22875 | 5' | -58.4 | NC_005137.2 | + | 28089 | 0.72 | 0.431781 |
Target: 5'- cGCAGCGCGG-CcuGCcGGGUGACaCCa -3' miRNA: 3'- -UGUCGCGCCaGuuUGuCCCGCUG-GGc -5' |
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22875 | 5' | -58.4 | NC_005137.2 | + | 7317 | 0.7 | 0.554847 |
Target: 5'- gGCAGgaUGCGGUCAAAguGcuGGCGcCCCGc -3' miRNA: 3'- -UGUC--GCGCCAGUUUguC--CCGCuGGGC- -5' |
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22875 | 5' | -58.4 | NC_005137.2 | + | 7186 | 0.69 | 0.635561 |
Target: 5'- uGCAGCGCauuUCGAACcGGcGCGugCCGu -3' miRNA: 3'- -UGUCGCGcc-AGUUUGuCC-CGCugGGC- -5' |
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22875 | 5' | -58.4 | NC_005137.2 | + | 5869 | 0.66 | 0.76432 |
Target: 5'- gGCGGUGCauuGUCAAgacguucgaGCGGcGCGGCCCGc -3' miRNA: 3'- -UGUCGCGc--CAGUU---------UGUCcCGCUGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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