miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22877 5' -54.5 NC_005137.2 + 142 0.66 0.903795
Target:  5'- cGUACAauucaggcgcgggcUGCGCgUCCaACGCGUucuuagGCAACg -3'
miRNA:   3'- -CAUGU--------------ACGCGaAGGcUGCGCG------CGUUG- -5'
22877 5' -54.5 NC_005137.2 + 1488 0.71 0.694279
Target:  5'- -----aGCGCUUCCGGuacauucCGcCGCGCGGCg -3'
miRNA:   3'- cauguaCGCGAAGGCU-------GC-GCGCGUUG- -5'
22877 5' -54.5 NC_005137.2 + 1544 0.66 0.899224
Target:  5'- -cGCAUGCGCauuaaCGugGCaaaaugGCGCGAUg -3'
miRNA:   3'- caUGUACGCGaag--GCugCG------CGCGUUG- -5'
22877 5' -54.5 NC_005137.2 + 5066 0.68 0.821629
Target:  5'- cGUGCGUGCGCcg-CGACauugagacgGCGCGuCGACu -3'
miRNA:   3'- -CAUGUACGCGaagGCUG---------CGCGC-GUUG- -5'
22877 5' -54.5 NC_005137.2 + 5937 0.68 0.830333
Target:  5'- uGUGCcuuUGCGCcguucagaUCCGGCGCcGCGCcGCc -3'
miRNA:   3'- -CAUGu--ACGCGa-------AGGCUGCG-CGCGuUG- -5'
22877 5' -54.5 NC_005137.2 + 6602 0.77 0.3786
Target:  5'- uGUACAacUGCGCgcugaaaCGACGCGCGCGcaGCa -3'
miRNA:   3'- -CAUGU--ACGCGaag----GCUGCGCGCGU--UG- -5'
22877 5' -54.5 NC_005137.2 + 8555 0.71 0.705645
Target:  5'- -aAUGUGCGCUcggCCGAcggaguagacCGCGCGCuGCa -3'
miRNA:   3'- caUGUACGCGAa--GGCU----------GCGCGCGuUG- -5'
22877 5' -54.5 NC_005137.2 + 10132 0.68 0.847162
Target:  5'- uUACGUGUGCga-CGACGUG-GCAAUc -3'
miRNA:   3'- cAUGUACGCGaagGCUGCGCgCGUUG- -5'
22877 5' -54.5 NC_005137.2 + 10510 0.7 0.715909
Target:  5'- ----uUGCGCaaucugUUCGGCGgGCGCAACg -3'
miRNA:   3'- cauguACGCGa-----AGGCUGCgCGCGUUG- -5'
22877 5' -54.5 NC_005137.2 + 12693 0.66 0.92919
Target:  5'- -aGCA-GCGCgucggaaCGGCGCGC-CAACa -3'
miRNA:   3'- caUGUaCGCGaag----GCUGCGCGcGUUG- -5'
22877 5' -54.5 NC_005137.2 + 14720 0.67 0.870841
Target:  5'- -gGCGUGCGUgcuggCCGucuuccacaACGUGaCGCAGCa -3'
miRNA:   3'- caUGUACGCGaa---GGC---------UGCGC-GCGUUG- -5'
22877 5' -54.5 NC_005137.2 + 16591 0.68 0.855271
Target:  5'- -gAUGUGCGCgcaUUGAUGCGCgGCGGCu -3'
miRNA:   3'- caUGUACGCGaa-GGCUGCGCG-CGUUG- -5'
22877 5' -54.5 NC_005137.2 + 17307 0.69 0.794458
Target:  5'- -gACAUugacGCGCUgugCGACGUGCGCGucGCa -3'
miRNA:   3'- caUGUA----CGCGAag-GCUGCGCGCGU--UG- -5'
22877 5' -54.5 NC_005137.2 + 22408 0.68 0.830333
Target:  5'- -aACAUgGCGCgcCUGACGCuGCGgAGCg -3'
miRNA:   3'- caUGUA-CGCGaaGGCUGCG-CGCgUUG- -5'
22877 5' -54.5 NC_005137.2 + 22891 0.68 0.855271
Target:  5'- aUGCG-GUGCUg-CGAUcgGCGCGCAACg -3'
miRNA:   3'- cAUGUaCGCGAagGCUG--CGCGCGUUG- -5'
22877 5' -54.5 NC_005137.2 + 24157 0.68 0.830333
Target:  5'- -cACAaucUGCGCguaCUG-CGUGCGCAACu -3'
miRNA:   3'- caUGU---ACGCGaa-GGCuGCGCGCGUUG- -5'
22877 5' -54.5 NC_005137.2 + 31024 0.8 0.259947
Target:  5'- gGUGCGUGCGCUgCUGGCGCacgaagaggcGCGCGGCc -3'
miRNA:   3'- -CAUGUACGCGAaGGCUGCG----------CGCGUUG- -5'
22877 5' -54.5 NC_005137.2 + 31078 0.7 0.726098
Target:  5'- aUGCGUGCGCgucgCCGAUGaUGCGUGGa -3'
miRNA:   3'- cAUGUACGCGaa--GGCUGC-GCGCGUUg -5'
22877 5' -54.5 NC_005137.2 + 31692 0.67 0.863166
Target:  5'- cGUGguUGUGCggucgcaCCGACGUGUGCAc- -3'
miRNA:   3'- -CAUguACGCGaa-----GGCUGCGCGCGUug -5'
22877 5' -54.5 NC_005137.2 + 32415 0.75 0.478863
Target:  5'- uUACG-GCGCUUUgCGAgGUGCGCAACa -3'
miRNA:   3'- cAUGUaCGCGAAG-GCUgCGCGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.