Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22878 | 3' | -47.4 | NC_005137.2 | + | 9256 | 0.67 | 0.998623 |
Target: 5'- gGCAAAccuuGAgacGGCUU-GUUGCGCGCgCGc -3' miRNA: 3'- -CGUUU----UUaa-CCGAAcCAACGCGUG-GC- -5' |
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22878 | 3' | -47.4 | NC_005137.2 | + | 17470 | 0.67 | 0.99757 |
Target: 5'- cGCAGGGuguggGGCUggUGGUgGUGCAgCCGu -3' miRNA: 3'- -CGUUUUuaa--CCGA--ACCAaCGCGU-GGC- -5' |
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22878 | 3' | -47.4 | NC_005137.2 | + | 31004 | 0.7 | 0.982985 |
Target: 5'- cGCuGGAGUUGGUggcggUUGGUgcgUGCGCugCu -3' miRNA: 3'- -CGuUUUUAACCG-----AACCA---ACGCGugGc -5' |
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22878 | 3' | -47.4 | NC_005137.2 | + | 34619 | 0.75 | 0.885569 |
Target: 5'- gGCGGAcaauuuGAUUGGC--GGuUUGCGCGCCGu -3' miRNA: 3'- -CGUUU------UUAACCGaaCC-AACGCGUGGC- -5' |
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22878 | 3' | -47.4 | NC_005137.2 | + | 43732 | 0.66 | 0.999526 |
Target: 5'- aGCAAGAAUcgUGGUagcGcGUaagcUGCGCGCCa -3' miRNA: 3'- -CGUUUUUA--ACCGaa-C-CA----ACGCGUGGc -5' |
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22878 | 3' | -47.4 | NC_005137.2 | + | 59776 | 0.67 | 0.99757 |
Target: 5'- uUAGAGAUUugcaacacGGUggGGUUGCGCGCg- -3' miRNA: 3'- cGUUUUUAA--------CCGaaCCAACGCGUGgc -5' |
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22878 | 3' | -47.4 | NC_005137.2 | + | 67137 | 0.67 | 0.998962 |
Target: 5'- uGCAA--GUUGGCguuugccgaauaaucUuuguccaaaugcUGGUUGUGCACCa -3' miRNA: 3'- -CGUUuuUAACCG---------------A------------ACCAACGCGUGGc -5' |
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22878 | 3' | -47.4 | NC_005137.2 | + | 74452 | 1.13 | 0.009674 |
Target: 5'- cGCAAAAAUUGGCUUGGUUGCGCACCGu -3' miRNA: 3'- -CGUUUUUAACCGAACCAACGCGUGGC- -5' |
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22878 | 3' | -47.4 | NC_005137.2 | + | 93459 | 0.66 | 0.999625 |
Target: 5'- uGCAuacg--GGCacGG-UGCGCGCCa -3' miRNA: 3'- -CGUuuuuaaCCGaaCCaACGCGUGGc -5' |
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22878 | 3' | -47.4 | NC_005137.2 | + | 95506 | 0.68 | 0.997096 |
Target: 5'- cGCAucgcuGAcgUGGCcggUGGcgacUUGCGCugCGu -3' miRNA: 3'- -CGUu----UUuaACCGa--ACC----AACGCGugGC- -5' |
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22878 | 3' | -47.4 | NC_005137.2 | + | 95577 | 0.73 | 0.927727 |
Target: 5'- gGCAGcguGUUGGCguuguaguuaaugaUGGgcGCGCGCCGa -3' miRNA: 3'- -CGUUuu-UAACCGa-------------ACCaaCGCGUGGC- -5' |
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22878 | 3' | -47.4 | NC_005137.2 | + | 96700 | 0.66 | 0.999406 |
Target: 5'- aCAAAAAgcgGGUUcgGcGUUGaCGCACCGc -3' miRNA: 3'- cGUUUUUaa-CCGAa-C-CAAC-GCGUGGC- -5' |
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22878 | 3' | -47.4 | NC_005137.2 | + | 97981 | 0.66 | 0.999526 |
Target: 5'- gGCAAAAcg-GGCgcgcggcgUGGgUGCGC-CCGc -3' miRNA: 3'- -CGUUUUuaaCCGa-------ACCaACGCGuGGC- -5' |
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22878 | 3' | -47.4 | NC_005137.2 | + | 99228 | 0.66 | 0.999625 |
Target: 5'- aGCuuguauGAUUGuuUUGGgcGCGCGCCc -3' miRNA: 3'- -CGuuu---UUAACcgAACCaaCGCGUGGc -5' |
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22878 | 3' | -47.4 | NC_005137.2 | + | 103415 | 0.71 | 0.966687 |
Target: 5'- uCAAuAGUUgcGGCUgcGGUUGCGUACCa -3' miRNA: 3'- cGUUuUUAA--CCGAa-CCAACGCGUGGc -5' |
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22878 | 3' | -47.4 | NC_005137.2 | + | 108099 | 0.7 | 0.986779 |
Target: 5'- aCGAGuugUGGUacGcGUUGCGCGCCGa -3' miRNA: 3'- cGUUUuuaACCGaaC-CAACGCGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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