miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22879 3' -52.1 NC_005137.2 + 60408 0.66 0.987308
Target:  5'- aGUGugGu-GgGCGCAAACGGU-UUGg -3'
miRNA:   3'- gCACugCuuUgCGCGUUUGCCGcAGC- -5'
22879 3' -52.1 NC_005137.2 + 130608 0.66 0.987308
Target:  5'- -uUGACGAAA-GCGCGGacACGcGCGcCGa -3'
miRNA:   3'- gcACUGCUUUgCGCGUU--UGC-CGCaGC- -5'
22879 3' -52.1 NC_005137.2 + 92214 0.66 0.987308
Target:  5'- cCGUGugGGcagcgaaguGACGCGCAucaccaacGACaGCGUgCGc -3'
miRNA:   3'- -GCACugCU---------UUGCGCGU--------UUGcCGCA-GC- -5'
22879 3' -52.1 NC_005137.2 + 28885 0.66 0.987308
Target:  5'- aCGUGugGAAugGU------GGCGUCGg -3'
miRNA:   3'- -GCACugCUUugCGcguuugCCGCAGC- -5'
22879 3' -52.1 NC_005137.2 + 34460 0.66 0.98715
Target:  5'- gGUGGCcaacccGACGCGCAAuuggaacgcaaacACGGUGUUu -3'
miRNA:   3'- gCACUGcu----UUGCGCGUU-------------UGCCGCAGc -5'
22879 3' -52.1 NC_005137.2 + 50843 0.66 0.985657
Target:  5'- -------cAACGCGCAAACGGCGg-- -3'
miRNA:   3'- gcacugcuUUGCGCGUUUGCCGCagc -5'
22879 3' -52.1 NC_005137.2 + 114141 0.66 0.985657
Target:  5'- -uUGGCGcaucuCGUGCAGcaacGCGGUGUCa -3'
miRNA:   3'- gcACUGCuuu--GCGCGUU----UGCCGCAGc -5'
22879 3' -52.1 NC_005137.2 + 92351 0.66 0.985657
Target:  5'- uGUGcCGcAACGCGCGccuGCccaGCGUCGa -3'
miRNA:   3'- gCACuGCuUUGCGCGUu--UGc--CGCAGC- -5'
22879 3' -52.1 NC_005137.2 + 70402 0.66 0.985657
Target:  5'- gGUGAagGAggUGUugGCGAA-GGCGUCGg -3'
miRNA:   3'- gCACUg-CUuuGCG--CGUUUgCCGCAGC- -5'
22879 3' -52.1 NC_005137.2 + 75582 0.66 0.985657
Target:  5'- -aUGGCGGA---CGCGGGCGGCGcCGu -3'
miRNA:   3'- gcACUGCUUugcGCGUUUGCCGCaGC- -5'
22879 3' -52.1 NC_005137.2 + 80931 0.66 0.983847
Target:  5'- --cGugGAGGCGCGCGucAAUGGCc--- -3'
miRNA:   3'- gcaCugCUUUGCGCGU--UUGCCGcagc -5'
22879 3' -52.1 NC_005137.2 + 30739 0.66 0.981869
Target:  5'- gCGUGAaugcCGcGACGCGCGccCGuGCGUUGc -3'
miRNA:   3'- -GCACU----GCuUUGCGCGUuuGC-CGCAGC- -5'
22879 3' -52.1 NC_005137.2 + 107984 0.66 0.981869
Target:  5'- gCGuUGACGc-GCGCGCAgcuugaucAAUGGCGUg- -3'
miRNA:   3'- -GC-ACUGCuuUGCGCGU--------UUGCCGCAgc -5'
22879 3' -52.1 NC_005137.2 + 36517 0.66 0.981661
Target:  5'- aCG-GugGGuuCGCGCAcgugcacGACGGCaUCGu -3'
miRNA:   3'- -GCaCugCUuuGCGCGU-------UUGCCGcAGC- -5'
22879 3' -52.1 NC_005137.2 + 88336 0.66 0.979714
Target:  5'- --cGuCGAuuGCGCGCu--UGGCGUCGc -3'
miRNA:   3'- gcaCuGCUu-UGCGCGuuuGCCGCAGC- -5'
22879 3' -52.1 NC_005137.2 + 53775 0.66 0.977374
Target:  5'- -uUGACaugcACGCGCAAACgGGCGaCGa -3'
miRNA:   3'- gcACUGcuu-UGCGCGUUUG-CCGCaGC- -5'
22879 3' -52.1 NC_005137.2 + 58701 0.66 0.977374
Target:  5'- aGUGGCGc--CGCGU---UGGCGUCa -3'
miRNA:   3'- gCACUGCuuuGCGCGuuuGCCGCAGc -5'
22879 3' -52.1 NC_005137.2 + 64144 0.67 0.974842
Target:  5'- aCGUgcGugGAAGCgcacccguGCGCGuuuAACGGCGcCGg -3'
miRNA:   3'- -GCA--CugCUUUG--------CGCGU---UUGCCGCaGC- -5'
22879 3' -52.1 NC_005137.2 + 125001 0.67 0.974842
Target:  5'- uCG-GGCGGGAUGcCGCAc-CGGCGaUCGg -3'
miRNA:   3'- -GCaCUGCUUUGC-GCGUuuGCCGC-AGC- -5'
22879 3' -52.1 NC_005137.2 + 42071 0.67 0.974842
Target:  5'- gCG-GGCGAAACGCGCGuguuuAGC-GUGUUGu -3'
miRNA:   3'- -GCaCUGCUUUGCGCGU-----UUGcCGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.