Results 1 - 20 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22879 | 3' | -52.1 | NC_005137.2 | + | 60408 | 0.66 | 0.987308 |
Target: 5'- aGUGugGu-GgGCGCAAACGGU-UUGg -3' miRNA: 3'- gCACugCuuUgCGCGUUUGCCGcAGC- -5' |
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22879 | 3' | -52.1 | NC_005137.2 | + | 130608 | 0.66 | 0.987308 |
Target: 5'- -uUGACGAAA-GCGCGGacACGcGCGcCGa -3' miRNA: 3'- gcACUGCUUUgCGCGUU--UGC-CGCaGC- -5' |
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22879 | 3' | -52.1 | NC_005137.2 | + | 92214 | 0.66 | 0.987308 |
Target: 5'- cCGUGugGGcagcgaaguGACGCGCAucaccaacGACaGCGUgCGc -3' miRNA: 3'- -GCACugCU---------UUGCGCGU--------UUGcCGCA-GC- -5' |
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22879 | 3' | -52.1 | NC_005137.2 | + | 28885 | 0.66 | 0.987308 |
Target: 5'- aCGUGugGAAugGU------GGCGUCGg -3' miRNA: 3'- -GCACugCUUugCGcguuugCCGCAGC- -5' |
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22879 | 3' | -52.1 | NC_005137.2 | + | 34460 | 0.66 | 0.98715 |
Target: 5'- gGUGGCcaacccGACGCGCAAuuggaacgcaaacACGGUGUUu -3' miRNA: 3'- gCACUGcu----UUGCGCGUU-------------UGCCGCAGc -5' |
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22879 | 3' | -52.1 | NC_005137.2 | + | 92351 | 0.66 | 0.985657 |
Target: 5'- uGUGcCGcAACGCGCGccuGCccaGCGUCGa -3' miRNA: 3'- gCACuGCuUUGCGCGUu--UGc--CGCAGC- -5' |
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22879 | 3' | -52.1 | NC_005137.2 | + | 114141 | 0.66 | 0.985657 |
Target: 5'- -uUGGCGcaucuCGUGCAGcaacGCGGUGUCa -3' miRNA: 3'- gcACUGCuuu--GCGCGUU----UGCCGCAGc -5' |
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22879 | 3' | -52.1 | NC_005137.2 | + | 50843 | 0.66 | 0.985657 |
Target: 5'- -------cAACGCGCAAACGGCGg-- -3' miRNA: 3'- gcacugcuUUGCGCGUUUGCCGCagc -5' |
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22879 | 3' | -52.1 | NC_005137.2 | + | 75582 | 0.66 | 0.985657 |
Target: 5'- -aUGGCGGA---CGCGGGCGGCGcCGu -3' miRNA: 3'- gcACUGCUUugcGCGUUUGCCGCaGC- -5' |
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22879 | 3' | -52.1 | NC_005137.2 | + | 70402 | 0.66 | 0.985657 |
Target: 5'- gGUGAagGAggUGUugGCGAA-GGCGUCGg -3' miRNA: 3'- gCACUg-CUuuGCG--CGUUUgCCGCAGC- -5' |
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22879 | 3' | -52.1 | NC_005137.2 | + | 80931 | 0.66 | 0.983847 |
Target: 5'- --cGugGAGGCGCGCGucAAUGGCc--- -3' miRNA: 3'- gcaCugCUUUGCGCGU--UUGCCGcagc -5' |
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22879 | 3' | -52.1 | NC_005137.2 | + | 30739 | 0.66 | 0.981869 |
Target: 5'- gCGUGAaugcCGcGACGCGCGccCGuGCGUUGc -3' miRNA: 3'- -GCACU----GCuUUGCGCGUuuGC-CGCAGC- -5' |
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22879 | 3' | -52.1 | NC_005137.2 | + | 107984 | 0.66 | 0.981869 |
Target: 5'- gCGuUGACGc-GCGCGCAgcuugaucAAUGGCGUg- -3' miRNA: 3'- -GC-ACUGCuuUGCGCGU--------UUGCCGCAgc -5' |
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22879 | 3' | -52.1 | NC_005137.2 | + | 36517 | 0.66 | 0.981661 |
Target: 5'- aCG-GugGGuuCGCGCAcgugcacGACGGCaUCGu -3' miRNA: 3'- -GCaCugCUuuGCGCGU-------UUGCCGcAGC- -5' |
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22879 | 3' | -52.1 | NC_005137.2 | + | 88336 | 0.66 | 0.979714 |
Target: 5'- --cGuCGAuuGCGCGCu--UGGCGUCGc -3' miRNA: 3'- gcaCuGCUu-UGCGCGuuuGCCGCAGC- -5' |
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22879 | 3' | -52.1 | NC_005137.2 | + | 53775 | 0.66 | 0.977374 |
Target: 5'- -uUGACaugcACGCGCAAACgGGCGaCGa -3' miRNA: 3'- gcACUGcuu-UGCGCGUUUG-CCGCaGC- -5' |
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22879 | 3' | -52.1 | NC_005137.2 | + | 58701 | 0.66 | 0.977374 |
Target: 5'- aGUGGCGc--CGCGU---UGGCGUCa -3' miRNA: 3'- gCACUGCuuuGCGCGuuuGCCGCAGc -5' |
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22879 | 3' | -52.1 | NC_005137.2 | + | 125001 | 0.67 | 0.974842 |
Target: 5'- uCG-GGCGGGAUGcCGCAc-CGGCGaUCGg -3' miRNA: 3'- -GCaCUGCUUUGC-GCGUuuGCCGC-AGC- -5' |
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22879 | 3' | -52.1 | NC_005137.2 | + | 64144 | 0.67 | 0.974842 |
Target: 5'- aCGUgcGugGAAGCgcacccguGCGCGuuuAACGGCGcCGg -3' miRNA: 3'- -GCA--CugCUUUG--------CGCGU---UUGCCGCaGC- -5' |
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22879 | 3' | -52.1 | NC_005137.2 | + | 42071 | 0.67 | 0.974842 |
Target: 5'- gCG-GGCGAAACGCGCGuguuuAGC-GUGUUGu -3' miRNA: 3'- -GCaCUGCUUUGCGCGU-----UUGcCGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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