miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22879 5' -56.1 NC_005137.2 + 95647 0.67 0.85617
Target:  5'- cGUGCGcCGUgCGCCGAcgggcaaGUGCGCc -3'
miRNA:   3'- aCGCGCcGCAgGUGGCUaag----CAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 61847 0.67 0.8507
Target:  5'- aGCGUGucuGCG-CCACCGuuauaaaauuuugcgCGUACGCu -3'
miRNA:   3'- aCGCGC---CGCaGGUGGCuaa------------GCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 124962 0.67 0.848326
Target:  5'- -aCGCGGCG-CCGgUGAUggggCGcUGCGCu -3'
miRNA:   3'- acGCGCCGCaGGUgGCUAa---GC-AUGCG- -5'
22879 5' -56.1 NC_005137.2 + 12954 0.67 0.848326
Target:  5'- cGCuGCGGCGcggCCACaaaCGGUUgGcACGCa -3'
miRNA:   3'- aCG-CGCCGCa--GGUG---GCUAAgCaUGCG- -5'
22879 5' -56.1 NC_005137.2 + 99963 0.67 0.848326
Target:  5'- gGcCGCGGcCG-CgCGCCucUUCGUGCGCc -3'
miRNA:   3'- aC-GCGCC-GCaG-GUGGcuAAGCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 88814 0.67 0.840287
Target:  5'- cGCGCGucGCGUCC-CUG--UCGgcggACGCg -3'
miRNA:   3'- aCGCGC--CGCAGGuGGCuaAGCa---UGCG- -5'
22879 5' -56.1 NC_005137.2 + 6011 0.67 0.840287
Target:  5'- gGUGCGGCaUCCcgcCCGAUUUccaACGCa -3'
miRNA:   3'- aCGCGCCGcAGGu--GGCUAAGca-UGCG- -5'
22879 5' -56.1 NC_005137.2 + 100000 0.67 0.840287
Target:  5'- cGUaGCGGCGcCgACCag--CGUGCGCg -3'
miRNA:   3'- aCG-CGCCGCaGgUGGcuaaGCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 18066 0.67 0.832059
Target:  5'- gGCGUGGUGUCCaACCaGAcgcCGUuuauguacACGCa -3'
miRNA:   3'- aCGCGCCGCAGG-UGG-CUaa-GCA--------UGCG- -5'
22879 5' -56.1 NC_005137.2 + 1735 0.68 0.82365
Target:  5'- cGCGuCGGCaUCUAUCGcgUUGUGUGCg -3'
miRNA:   3'- aCGC-GCCGcAGGUGGCuaAGCAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 49690 0.68 0.818521
Target:  5'- cGCGCGGCGguaacuacgcgccgcUUgGCCGGUguagguguuUCGUcCGCu -3'
miRNA:   3'- aCGCGCCGC---------------AGgUGGCUA---------AGCAuGCG- -5'
22879 5' -56.1 NC_005137.2 + 36687 0.68 0.815068
Target:  5'- cGCGUGGUGUUUAUCaAUUUuUACGCg -3'
miRNA:   3'- aCGCGCCGCAGGUGGcUAAGcAUGCG- -5'
22879 5' -56.1 NC_005137.2 + 72318 0.68 0.797414
Target:  5'- -aCGCGGCG-CCACUGuc-CGaACGCg -3'
miRNA:   3'- acGCGCCGCaGGUGGCuaaGCaUGCG- -5'
22879 5' -56.1 NC_005137.2 + 99377 0.68 0.788361
Target:  5'- cGCGC-GCGUgCACUGAc-CGUugGCc -3'
miRNA:   3'- aCGCGcCGCAgGUGGCUaaGCAugCG- -5'
22879 5' -56.1 NC_005137.2 + 51331 0.68 0.779166
Target:  5'- aGCGgGGuCGUCCGCCGccgCGccUGCa -3'
miRNA:   3'- aCGCgCC-GCAGGUGGCuaaGCauGCG- -5'
22879 5' -56.1 NC_005137.2 + 85333 0.68 0.779166
Target:  5'- cGCGuUGGCG-CCGCCGcccaCGUugGUg -3'
miRNA:   3'- aCGC-GCCGCaGGUGGCuaa-GCAugCG- -5'
22879 5' -56.1 NC_005137.2 + 15272 0.69 0.760394
Target:  5'- uUGCGUugcaccuuGGCGUCCACUaGUauaUCGU-CGCa -3'
miRNA:   3'- -ACGCG--------CCGCAGGUGGcUA---AGCAuGCG- -5'
22879 5' -56.1 NC_005137.2 + 93573 0.69 0.750833
Target:  5'- gUGCGCGGCGgcaaucaCGCUGAUccaaacgCGcgGCGCu -3'
miRNA:   3'- -ACGCGCCGCag-----GUGGCUAa------GCa-UGCG- -5'
22879 5' -56.1 NC_005137.2 + 23029 0.69 0.741169
Target:  5'- cUGCGCGcGCGUCaacgcgACCGAUcgCGcaUACGUg -3'
miRNA:   3'- -ACGCGC-CGCAGg-----UGGCUAa-GC--AUGCG- -5'
22879 5' -56.1 NC_005137.2 + 130314 0.69 0.731409
Target:  5'- cGCGCaaaGGCG-CUACCGA-UCGcaGCGCg -3'
miRNA:   3'- aCGCG---CCGCaGGUGGCUaAGCa-UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.