Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2288 | 3' | -56.2 | NC_001407.1 | + | 8492 | 0.68 | 0.131363 |
Target: 5'- aAGGGCCGgguGCcauaCCCAGGGAu-GGUCa- -3' miRNA: 3'- -UCCCGGU---UGc---GGGUCCUUuuCCAGag -5' |
|||||||
2288 | 3' | -56.2 | NC_001407.1 | + | 2071 | 0.72 | 0.056 |
Target: 5'- cGGGGCCGugGCCCGGcccuGAGccaccugccGUCUCg -3' miRNA: 3'- -UCCCGGUugCGGGUCcuu-UUC---------CAGAG- -5' |
|||||||
2288 | 3' | -56.2 | NC_001407.1 | + | 2040 | 1.09 | 0.000049 |
Target: 5'- cAGGGCCAACGCCCAGGAAAAGGUCUCu -3' miRNA: 3'- -UCCCGGUUGCGGGUCCUUUUCCAGAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home