miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2288 5' -63.4 NC_001407.1 + 2075 1.11 0.000008
Target:  5'- gCCGUGGCCCGGCCCUGAGCCACCUGCc -3'
miRNA:   3'- -GGCACCGGGCCGGGACUCGGUGGACG- -5'
2288 5' -63.4 NC_001407.1 + 3208 0.66 0.076878
Target:  5'- cCCGUaGGCCUGGuagcagaaCCCagGAuaGCCACCUuGUg -3'
miRNA:   3'- -GGCA-CCGGGCC--------GGGa-CU--CGGUGGA-CG- -5'
2288 5' -63.4 NC_001407.1 + 2096 0.66 0.074529
Target:  5'- gCCG-GGCCaCGGCCCcgaagaGAGaCCuuuuCCUGg -3'
miRNA:   3'- -GGCaCCGG-GCCGGGa-----CUC-GGu---GGACg -5'
2288 5' -63.4 NC_001407.1 + 7300 0.68 0.04375
Target:  5'- uCgGUGGCCaCGGuCCCgaagGAGCgGCUgggguUGCg -3'
miRNA:   3'- -GgCACCGG-GCC-GGGa---CUCGgUGG-----ACG- -5'
2288 5' -63.4 NC_001407.1 + 1043 0.69 0.04239
Target:  5'- ---aGGgCCGGCCCagGAGCCugACCcGCa -3'
miRNA:   3'- ggcaCCgGGCCGGGa-CUCGG--UGGaCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.