Results 61 - 70 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22880 | 3' | -50.4 | NC_005137.2 | + | 60852 | 0.73 | 0.842934 |
Target: 5'- uUACGGGCGCGUCGu---CGUUaaGCg -3' miRNA: 3'- gGUGCUCGCGCAGCuuauGUAAggCG- -5' |
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22880 | 3' | -50.4 | NC_005137.2 | + | 33190 | 0.73 | 0.850353 |
Target: 5'- aCACGGgucaauuGCGCGUCGAAgaGCGcaCCGCg -3' miRNA: 3'- gGUGCU-------CGCGCAGCUUa-UGUaaGGCG- -5' |
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22880 | 3' | -50.4 | NC_005137.2 | + | 11365 | 0.73 | 0.866993 |
Target: 5'- gCCACGAGCGCGU---------UCCGCg -3' miRNA: 3'- -GGUGCUCGCGCAgcuuauguaAGGCG- -5' |
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22880 | 3' | -50.4 | NC_005137.2 | + | 51071 | 0.74 | 0.798884 |
Target: 5'- aCCAUGAGCGUGaUCGAcGUGCAcauaCGCa -3' miRNA: 3'- -GGUGCUCGCGC-AGCU-UAUGUaag-GCG- -5' |
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22880 | 3' | -50.4 | NC_005137.2 | + | 128693 | 0.75 | 0.759731 |
Target: 5'- uCCACGAGCGCGuugcggUCGAggaacccaaaacgAUGCAcaUCCGUg -3' miRNA: 3'- -GGUGCUCGCGC------AGCU-------------UAUGUa-AGGCG- -5' |
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22880 | 3' | -50.4 | NC_005137.2 | + | 108317 | 0.75 | 0.740862 |
Target: 5'- --uUGAGCGCGUUGGGgcUACAUUCgGCc -3' miRNA: 3'- gguGCUCGCGCAGCUU--AUGUAAGgCG- -5' |
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22880 | 3' | -50.4 | NC_005137.2 | + | 22435 | 0.76 | 0.700032 |
Target: 5'- aCACGGGCGCGccgcCGAucacGUACAUuugCCGCu -3' miRNA: 3'- gGUGCUCGCGCa---GCU----UAUGUAa--GGCG- -5' |
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22880 | 3' | -50.4 | NC_005137.2 | + | 67356 | 0.76 | 0.689648 |
Target: 5'- aCCGCGGGCGCGaCGcGAUGCGcgaccgucgCCGCg -3' miRNA: 3'- -GGUGCUCGCGCaGC-UUAUGUaa-------GGCG- -5' |
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22880 | 3' | -50.4 | NC_005137.2 | + | 100265 | 0.77 | 0.679213 |
Target: 5'- gCACGGgcGCGCGUCGcg-GCAUUCaCGCc -3' miRNA: 3'- gGUGCU--CGCGCAGCuuaUGUAAG-GCG- -5' |
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22880 | 3' | -50.4 | NC_005137.2 | + | 70120 | 1.15 | 0.004357 |
Target: 5'- aCCACGAGCGCGUCGAAUACAUUCCGCu -3' miRNA: 3'- -GGUGCUCGCGCAGCUUAUGUAAGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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