miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22880 3' -50.4 NC_005137.2 + 23085 0.67 0.987411
Target:  5'- aCACG-GCGCGUU------GUUCCGCg -3'
miRNA:   3'- gGUGCuCGCGCAGcuuaugUAAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 97918 0.67 0.990276
Target:  5'- aCCACcuugucguuGGGCGUGUCaAGUACuugCUGCa -3'
miRNA:   3'- -GGUG---------CUCGCGCAGcUUAUGuaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 30747 0.67 0.991502
Target:  5'- gCCGCGAcGCGCG-CccGUGCGUUgCgGCg -3'
miRNA:   3'- -GGUGCU-CGCGCaGcuUAUGUAA-GgCG- -5'
22880 3' -50.4 NC_005137.2 + 33672 0.67 0.991502
Target:  5'- gCCugGAGCGCGUUGcgucuUugAg--CGCa -3'
miRNA:   3'- -GGugCUCGCGCAGCuu---AugUaagGCG- -5'
22880 3' -50.4 NC_005137.2 + 8415 0.67 0.991502
Target:  5'- uCCGCG-GCGUGUUucaggGCAUuaacgaUCCGCa -3'
miRNA:   3'- -GGUGCuCGCGCAGcuua-UGUA------AGGCG- -5'
22880 3' -50.4 NC_005137.2 + 38341 0.67 0.992602
Target:  5'- -gGCGuaagcAGCGCGUUGAcagugGCGUUgaCCGCa -3'
miRNA:   3'- ggUGC-----UCGCGCAGCUua---UGUAA--GGCG- -5'
22880 3' -50.4 NC_005137.2 + 95499 0.67 0.988915
Target:  5'- gCACGGGCGCaUCGcugACGUggCCGg -3'
miRNA:   3'- gGUGCUCGCGcAGCuuaUGUAa-GGCg -5'
22880 3' -50.4 NC_005137.2 + 115298 0.67 0.990276
Target:  5'- -gACGAGCuGCGggCGAuUGCg--CCGCg -3'
miRNA:   3'- ggUGCUCG-CGCa-GCUuAUGuaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 107963 0.67 0.991502
Target:  5'- gUCACGuauGCGCGaUCGGucGCGUUgaCGCg -3'
miRNA:   3'- -GGUGCu--CGCGC-AGCUuaUGUAAg-GCG- -5'
22880 3' -50.4 NC_005137.2 + 75971 0.67 0.991502
Target:  5'- aCGCGGcGCGCGUUG-GUGCAcggCGCa -3'
miRNA:   3'- gGUGCU-CGCGCAGCuUAUGUaagGCG- -5'
22880 3' -50.4 NC_005137.2 + 99334 0.67 0.991027
Target:  5'- aCCACGcGGCgGUGUCGuccgcuAUGCAcagcguggucgcgUCCGCg -3'
miRNA:   3'- -GGUGC-UCG-CGCAGCu-----UAUGUa------------AGGCG- -5'
22880 3' -50.4 NC_005137.2 + 88511 0.67 0.988915
Target:  5'- gCCGCGcAGCaaGCGcCGuGUGCGUUCC-Ca -3'
miRNA:   3'- -GGUGC-UCG--CGCaGCuUAUGUAAGGcG- -5'
22880 3' -50.4 NC_005137.2 + 87503 0.67 0.992602
Target:  5'- uCgACGAGCGUGauaUCGu----GUUCCGCa -3'
miRNA:   3'- -GgUGCUCGCGC---AGCuuaugUAAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 74282 0.66 0.996527
Target:  5'- uUCGCGcaugauaagaGGCGCGUUGAGU-CGUUCuugaucguuuuCGCg -3'
miRNA:   3'- -GGUGC----------UCGCGCAGCUUAuGUAAG-----------GCG- -5'
22880 3' -50.4 NC_005137.2 + 7867 0.66 0.994784
Target:  5'- uCCACGAGCGUGcCGucacguaggaaaacGUGCAcaCCGg -3'
miRNA:   3'- -GGUGCUCGCGCaGCu-------------UAUGUaaGGCg -5'
22880 3' -50.4 NC_005137.2 + 26454 0.66 0.996527
Target:  5'- -gACGAGUGCuuccgCGAcaACGUgggCCGCg -3'
miRNA:   3'- ggUGCUCGCGca---GCUuaUGUAa--GGCG- -5'
22880 3' -50.4 NC_005137.2 + 87189 0.66 0.995925
Target:  5'- uCgACGGGCGCGggCGGcUGCucgugCCGUc -3'
miRNA:   3'- -GgUGCUCGCGCa-GCUuAUGuaa--GGCG- -5'
22880 3' -50.4 NC_005137.2 + 22266 0.66 0.995239
Target:  5'- -aACGAuGCGCGUCGuuug---UCUGCg -3'
miRNA:   3'- ggUGCU-CGCGCAGCuuauguaAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 108754 0.66 0.995239
Target:  5'- uUCGgGAGCGCGcUGcucaaAGUGCAcuUUCCGUg -3'
miRNA:   3'- -GGUgCUCGCGCaGC-----UUAUGU--AAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 43567 0.66 0.995239
Target:  5'- -uGCGGGCGCa-CGAAUGCGUaCUGg -3'
miRNA:   3'- ggUGCUCGCGcaGCUUAUGUAaGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.