Results 61 - 70 of 70 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22880 | 3' | -50.4 | NC_005137.2 | + | 108317 | 0.75 | 0.740862 |
Target: 5'- --uUGAGCGCGUUGGGgcUACAUUCgGCc -3' miRNA: 3'- gguGCUCGCGCAGCUU--AUGUAAGgCG- -5' |
|||||||
22880 | 3' | -50.4 | NC_005137.2 | + | 108754 | 0.66 | 0.995239 |
Target: 5'- uUCGgGAGCGCGcUGcucaaAGUGCAcuUUCCGUg -3' miRNA: 3'- -GGUgCUCGCGCaGC-----UUAUGU--AAGGCG- -5' |
|||||||
22880 | 3' | -50.4 | NC_005137.2 | + | 110417 | 0.69 | 0.974865 |
Target: 5'- uCCACGuaCGCGUCGAcgGuCAUgUCGCg -3' miRNA: 3'- -GGUGCucGCGCAGCUuaU-GUAaGGCG- -5' |
|||||||
22880 | 3' | -50.4 | NC_005137.2 | + | 110429 | 0.72 | 0.90892 |
Target: 5'- -aACGGGCGCGaCGGugagcGUGCAcaCCGCg -3' miRNA: 3'- ggUGCUCGCGCaGCU-----UAUGUaaGGCG- -5' |
|||||||
22880 | 3' | -50.4 | NC_005137.2 | + | 112223 | 0.7 | 0.950891 |
Target: 5'- -aACGuGCGCGcagugaugaUUGAAcgcgGCGUUCCGCg -3' miRNA: 3'- ggUGCuCGCGC---------AGCUUa---UGUAAGGCG- -5' |
|||||||
22880 | 3' | -50.4 | NC_005137.2 | + | 115298 | 0.67 | 0.990276 |
Target: 5'- -gACGAGCuGCGggCGAuUGCg--CCGCg -3' miRNA: 3'- ggUGCUCG-CGCa-GCUuAUGuaaGGCG- -5' |
|||||||
22880 | 3' | -50.4 | NC_005137.2 | + | 119540 | 0.72 | 0.881922 |
Target: 5'- uCCGCuGA-CGUGUCGAGUGCGUUuaGCc -3' miRNA: 3'- -GGUG-CUcGCGCAGCUUAUGUAAggCG- -5' |
|||||||
22880 | 3' | -50.4 | NC_005137.2 | + | 123847 | 0.68 | 0.983935 |
Target: 5'- aCUGUGAGCGCG-CGGcuUACAcgCCGCg -3' miRNA: 3'- -GGUGCUCGCGCaGCUu-AUGUaaGGCG- -5' |
|||||||
22880 | 3' | -50.4 | NC_005137.2 | + | 124395 | 0.7 | 0.955411 |
Target: 5'- gCUGCGcGCGCGUCGuuucagcgcgcaguuGUACAagUUCUGCu -3' miRNA: 3'- -GGUGCuCGCGCAGCu--------------UAUGU--AAGGCG- -5' |
|||||||
22880 | 3' | -50.4 | NC_005137.2 | + | 128693 | 0.75 | 0.759731 |
Target: 5'- uCCACGAGCGCGuugcggUCGAggaacccaaaacgAUGCAcaUCCGUg -3' miRNA: 3'- -GGUGCUCGCGC------AGCU-------------UAUGUa-AGGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home