miRNA display CGI


Results 41 - 60 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22880 3' -50.4 NC_005137.2 + 119540 0.72 0.881922
Target:  5'- uCCGCuGA-CGUGUCGAGUGCGUUuaGCc -3'
miRNA:   3'- -GGUG-CUcGCGCAGCUUAUGUAAggCG- -5'
22880 3' -50.4 NC_005137.2 + 11365 0.73 0.866993
Target:  5'- gCCACGAGCGCGU---------UCCGCg -3'
miRNA:   3'- -GGUGCUCGCGCAgcuuauguaAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 87503 0.67 0.992602
Target:  5'- uCgACGAGCGUGauaUCGu----GUUCCGCa -3'
miRNA:   3'- -GgUGCUCGCGC---AGCuuaugUAAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 60852 0.73 0.842934
Target:  5'- uUACGGGCGCGUCGu---CGUUaaGCg -3'
miRNA:   3'- gGUGCUCGCGCAGCuuauGUAAggCG- -5'
22880 3' -50.4 NC_005137.2 + 75971 0.67 0.991502
Target:  5'- aCGCGGcGCGCGUUG-GUGCAcggCGCa -3'
miRNA:   3'- gGUGCU-CGCGCAGCuUAUGUaagGCG- -5'
22880 3' -50.4 NC_005137.2 + 124395 0.7 0.955411
Target:  5'- gCUGCGcGCGCGUCGuuucagcgcgcaguuGUACAagUUCUGCu -3'
miRNA:   3'- -GGUGCuCGCGCAGCu--------------UAUGU--AAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 80171 0.7 0.958893
Target:  5'- gCCGCcGuuuGCGCGUUGuuaauguuGUGCAgcauUUCCGCa -3'
miRNA:   3'- -GGUG-Cu--CGCGCAGCu-------UAUGU----AAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 35714 0.69 0.969138
Target:  5'- -aACGGGCGCGUUGucGUGCuuaaUCGCg -3'
miRNA:   3'- ggUGCUCGCGCAGCu-UAUGuaa-GGCG- -5'
22880 3' -50.4 NC_005137.2 + 30487 0.68 0.986436
Target:  5'- -gGCG-GCGCGUCGAcagcucaagcggauuAUACAgcgCCGa -3'
miRNA:   3'- ggUGCuCGCGCAGCU---------------UAUGUaa-GGCg -5'
22880 3' -50.4 NC_005137.2 + 16073 0.66 0.995239
Target:  5'- -aGCGAGCGCGUUGGcuUGCAaaUUCaGUu -3'
miRNA:   3'- ggUGCUCGCGCAGCUu-AUGU--AAGgCG- -5'
22880 3' -50.4 NC_005137.2 + 36035 0.66 0.995925
Target:  5'- aCACGGGCGCGggcguuaaaagCGuuguUGCAUacCCGUg -3'
miRNA:   3'- gGUGCUCGCGCa----------GCuu--AUGUAa-GGCG- -5'
22880 3' -50.4 NC_005137.2 + 78650 0.66 0.996527
Target:  5'- aCUGCGAGuUGUGUCaAAUGCGUgUCgGCu -3'
miRNA:   3'- -GGUGCUC-GCGCAGcUUAUGUA-AGgCG- -5'
22880 3' -50.4 NC_005137.2 + 96487 0.66 0.996527
Target:  5'- aCACGGuGCGCGUCGuGUccACGgg-CGCu -3'
miRNA:   3'- gGUGCU-CGCGCAGCuUA--UGUaagGCG- -5'
22880 3' -50.4 NC_005137.2 + 123847 0.68 0.983935
Target:  5'- aCUGUGAGCGCG-CGGcuUACAcgCCGCg -3'
miRNA:   3'- -GGUGCUCGCGCaGCUu-AUGUaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 21618 0.68 0.983935
Target:  5'- aCACccAGCGCGUCGAAcUAUuuuGUUgCGCa -3'
miRNA:   3'- gGUGc-UCGCGCAGCUU-AUG---UAAgGCG- -5'
22880 3' -50.4 NC_005137.2 + 32802 0.68 0.981946
Target:  5'- aCACa---GCGUCGAAUACGUgcCCGUg -3'
miRNA:   3'- gGUGcucgCGCAGCUUAUGUAa-GGCG- -5'
22880 3' -50.4 NC_005137.2 + 63709 0.68 0.981946
Target:  5'- -uGCGGGCGaCGUCaaauUGCGUUgcCCGCa -3'
miRNA:   3'- ggUGCUCGC-GCAGcuu-AUGUAA--GGCG- -5'
22880 3' -50.4 NC_005137.2 + 97986 0.68 0.979776
Target:  5'- -aACGGGCGCGcggcgUGggUGCGc-CCGCc -3'
miRNA:   3'- ggUGCUCGCGCa----GCuuAUGUaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 95499 0.67 0.988915
Target:  5'- gCACGGGCGCaUCGcugACGUggCCGg -3'
miRNA:   3'- gGUGCUCGCGcAGCuuaUGUAa-GGCg -5'
22880 3' -50.4 NC_005137.2 + 115298 0.67 0.990276
Target:  5'- -gACGAGCuGCGggCGAuUGCg--CCGCg -3'
miRNA:   3'- ggUGCUCG-CGCa-GCUuAUGuaaGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.