Results 61 - 70 of 70 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 22880 | 3' | -50.4 | NC_005137.2 | + | 87503 | 0.67 | 0.992602 |
|
Target: 5'- uCgACGAGCGUGauaUCGu----GUUCCGCa -3' miRNA: 3'- -GgUGCUCGCGC---AGCuuaugUAAGGCG- -5' |
|||||||
| 22880 | 3' | -50.4 | NC_005137.2 | + | 107963 | 0.67 | 0.991502 |
|
Target: 5'- gUCACGuauGCGCGaUCGGucGCGUUgaCGCg -3' miRNA: 3'- -GGUGCu--CGCGC-AGCUuaUGUAAg-GCG- -5' |
|||||||
| 22880 | 3' | -50.4 | NC_005137.2 | + | 115298 | 0.67 | 0.990276 |
|
Target: 5'- -gACGAGCuGCGggCGAuUGCg--CCGCg -3' miRNA: 3'- ggUGCUCG-CGCa-GCUuAUGuaaGGCG- -5' |
|||||||
| 22880 | 3' | -50.4 | NC_005137.2 | + | 95499 | 0.67 | 0.988915 |
|
Target: 5'- gCACGGGCGCaUCGcugACGUggCCGg -3' miRNA: 3'- gGUGCUCGCGcAGCuuaUGUAa-GGCg -5' |
|||||||
| 22880 | 3' | -50.4 | NC_005137.2 | + | 88511 | 0.67 | 0.988915 |
|
Target: 5'- gCCGCGcAGCaaGCGcCGuGUGCGUUCC-Ca -3' miRNA: 3'- -GGUGC-UCG--CGCaGCuUAUGUAAGGcG- -5' |
|||||||
| 22880 | 3' | -50.4 | NC_005137.2 | + | 30487 | 0.68 | 0.986436 |
|
Target: 5'- -gGCG-GCGCGUCGAcagcucaagcggauuAUACAgcgCCGa -3' miRNA: 3'- ggUGCuCGCGCAGCU---------------UAUGUaa-GGCg -5' |
|||||||
| 22880 | 3' | -50.4 | NC_005137.2 | + | 123847 | 0.68 | 0.983935 |
|
Target: 5'- aCUGUGAGCGCG-CGGcuUACAcgCCGCg -3' miRNA: 3'- -GGUGCUCGCGCaGCUu-AUGUaaGGCG- -5' |
|||||||
| 22880 | 3' | -50.4 | NC_005137.2 | + | 21618 | 0.68 | 0.983935 |
|
Target: 5'- aCACccAGCGCGUCGAAcUAUuuuGUUgCGCa -3' miRNA: 3'- gGUGc-UCGCGCAGCUU-AUG---UAAgGCG- -5' |
|||||||
| 22880 | 3' | -50.4 | NC_005137.2 | + | 32802 | 0.68 | 0.981946 |
|
Target: 5'- aCACa---GCGUCGAAUACGUgcCCGUg -3' miRNA: 3'- gGUGcucgCGCAGCUUAUGUAa-GGCG- -5' |
|||||||
| 22880 | 3' | -50.4 | NC_005137.2 | + | 100265 | 0.77 | 0.679213 |
|
Target: 5'- gCACGGgcGCGCGUCGcg-GCAUUCaCGCc -3' miRNA: 3'- gGUGCU--CGCGCAGCuuaUGUAAG-GCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home