miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22880 5' -52.6 NC_005137.2 + 6612 0.68 0.933781
Target:  5'- cGCGCUgaAACGACGcGCGCGCagcaugaCGUu-- -3'
miRNA:   3'- -CGCGAa-UUGCUGC-UGCGCGg------GCAuuu -5'
22880 5' -52.6 NC_005137.2 + 94971 0.66 0.973196
Target:  5'- aCGCUuuUAACGcc--CGCGCCCGUGu- -3'
miRNA:   3'- cGCGA--AUUGCugcuGCGCGGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 63023 0.66 0.9703
Target:  5'- cGCGCguggccAACGACGACGUGCg------ -3'
miRNA:   3'- -CGCGaa----UUGCUGCUGCGCGggcauuu -5'
22880 5' -52.6 NC_005137.2 + 118651 0.67 0.943611
Target:  5'- cGUGCUauggaagGugGACGACGCuguggcaaaGUCCGUGGu -3'
miRNA:   3'- -CGCGAa------UugCUGCUGCG---------CGGGCAUUu -5'
22880 5' -52.6 NC_005137.2 + 93344 0.67 0.943611
Target:  5'- cGUGCUgacCGGCGACGCGUuaGUu-- -3'
miRNA:   3'- -CGCGAauuGCUGCUGCGCGggCAuuu -5'
22880 5' -52.6 NC_005137.2 + 40613 0.66 0.9703
Target:  5'- gGCGaCgaccAACGugGACGCGCUCu---- -3'
miRNA:   3'- -CGC-Gaa--UUGCugCUGCGCGGGcauuu -5'
22880 5' -52.6 NC_005137.2 + 11294 0.66 0.96385
Target:  5'- gGCGCUgcGCGGCGGgaUGCGUaCGUGc- -3'
miRNA:   3'- -CGCGAauUGCUGCU--GCGCGgGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 71060 0.67 0.947706
Target:  5'- uGCGCaucAACGA-GGCGCGCCagcucagCGUAGAa -3'
miRNA:   3'- -CGCGaa-UUGCUgCUGCGCGG-------GCAUUU- -5'
22880 5' -52.6 NC_005137.2 + 8456 0.67 0.93833
Target:  5'- uCGCUUAcgcaauuGCGACGcgccgauaACGUGCCCGa--- -3'
miRNA:   3'- cGCGAAU-------UGCUGC--------UGCGCGGGCauuu -5'
22880 5' -52.6 NC_005137.2 + 85965 0.68 0.911064
Target:  5'- -aGacaUUGAUuACGACGgGCCCGUAAAg -3'
miRNA:   3'- cgCg--AAUUGcUGCUGCgCGGGCAUUU- -5'
22880 5' -52.6 NC_005137.2 + 70154 1.08 0.005756
Target:  5'- aGCGCUUAACGACGACGCGCCCGUAAAc -3'
miRNA:   3'- -CGCGAAUUGCUGCUGCGCGGGCAUUU- -5'
22880 5' -52.6 NC_005137.2 + 104366 0.66 0.967187
Target:  5'- cGCGCU--GCGACG-CGCacGCuuGUAc- -3'
miRNA:   3'- -CGCGAauUGCUGCuGCG--CGggCAUuu -5'
22880 5' -52.6 NC_005137.2 + 123998 0.66 0.967187
Target:  5'- cGCGCgu-GCGccACGuuGUGCCCGgcGAc -3'
miRNA:   3'- -CGCGaauUGC--UGCugCGCGGGCauUU- -5'
22880 5' -52.6 NC_005137.2 + 75589 0.67 0.943611
Target:  5'- aCGCgg-GCGGCGcCGUGCgCGUGGAg -3'
miRNA:   3'- cGCGaauUGCUGCuGCGCGgGCAUUU- -5'
22880 5' -52.6 NC_005137.2 + 33020 0.67 0.938823
Target:  5'- gGCGCacccACGcCG-CGCGCCCGUu-- -3'
miRNA:   3'- -CGCGaau-UGCuGCuGCGCGGGCAuuu -5'
22880 5' -52.6 NC_005137.2 + 7952 0.66 0.966864
Target:  5'- uGCGCgccGCGAccucgacCGGCG-GCCCGUGu- -3'
miRNA:   3'- -CGCGaauUGCU-------GCUGCgCGGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 118099 0.68 0.911064
Target:  5'- gGCGUUUGcCGAUuAUGCGCUCGUGu- -3'
miRNA:   3'- -CGCGAAUuGCUGcUGCGCGGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 73910 0.69 0.891374
Target:  5'- gGCGUcau-CGuuuUGGCGCGCCCGUGc- -3'
miRNA:   3'- -CGCGaauuGCu--GCUGCGCGGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 22895 0.67 0.95648
Target:  5'- gGUGCU--GCGAuCGGCGCGCaacgCGUAc- -3'
miRNA:   3'- -CGCGAauUGCU-GCUGCGCGg---GCAUuu -5'
22880 5' -52.6 NC_005137.2 + 82232 0.67 0.943611
Target:  5'- aCGCUguGCGGCGcCGCGUCCa---- -3'
miRNA:   3'- cGCGAauUGCUGCuGCGCGGGcauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.