miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22880 5' -52.6 NC_005137.2 + 18304 0.71 0.819802
Target:  5'- uGgGC--GugGACGACGUGCCCGc--- -3'
miRNA:   3'- -CgCGaaUugCUGCUGCGCGGGCauuu -5'
22880 5' -52.6 NC_005137.2 + 88345 0.7 0.828589
Target:  5'- cGCGCUUGGCGu---CGCGCCaaaGUAGu -3'
miRNA:   3'- -CGCGAAUUGCugcuGCGCGGg--CAUUu -5'
22880 5' -52.6 NC_005137.2 + 35492 0.7 0.848882
Target:  5'- aGCGCaaguCGccaccggccacgucaGCGAUGCGCCCGUGc- -3'
miRNA:   3'- -CGCGaauuGC---------------UGCUGCGCGGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 27461 0.7 0.853771
Target:  5'- cGCGCaaUUGACGucGCGACGUGCgCCGc--- -3'
miRNA:   3'- -CGCG--AAUUGC--UGCUGCGCG-GGCauuu -5'
22880 5' -52.6 NC_005137.2 + 128913 0.7 0.853771
Target:  5'- cCGCccAAUGAUGAggacagccaaCGCGCCCGUGAu -3'
miRNA:   3'- cGCGaaUUGCUGCU----------GCGCGGGCAUUu -5'
22880 5' -52.6 NC_005137.2 + 13068 0.7 0.861746
Target:  5'- cGCGUUU-GCGAa-ACGCGCCCGa--- -3'
miRNA:   3'- -CGCGAAuUGCUgcUGCGCGGGCauuu -5'
22880 5' -52.6 NC_005137.2 + 112399 0.69 0.8695
Target:  5'- uGCGCgaucGCGcACGGCGCGCCauuGUGc- -3'
miRNA:   3'- -CGCGaau-UGC-UGCUGCGCGGg--CAUuu -5'
22880 5' -52.6 NC_005137.2 + 87040 0.69 0.8695
Target:  5'- gGCGaguacaacaUGGCgGugGACGCGCCCGUuGAa -3'
miRNA:   3'- -CGCga-------AUUG-CugCUGCGCGGGCAuUU- -5'
22880 5' -52.6 NC_005137.2 + 37544 0.69 0.88432
Target:  5'- gGCGC-UGGCG-CGcacCGUGCCCGUAu- -3'
miRNA:   3'- -CGCGaAUUGCuGCu--GCGCGGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 73910 0.69 0.891374
Target:  5'- gGCGUcau-CGuuuUGGCGCGCCCGUGc- -3'
miRNA:   3'- -CGCGaauuGCu--GCUGCGCGGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 56668 0.69 0.891374
Target:  5'- cGUGCUUGcCGACGGCGCuGUggaCGUGAc -3'
miRNA:   3'- -CGCGAAUuGCUGCUGCG-CGg--GCAUUu -5'
22880 5' -52.6 NC_005137.2 + 18243 0.69 0.898185
Target:  5'- uGCGCgucguucgUAcuGCGGCGcCGCGUCCGUu-- -3'
miRNA:   3'- -CGCGa-------AU--UGCUGCuGCGCGGGCAuuu -5'
22880 5' -52.6 NC_005137.2 + 118099 0.68 0.911064
Target:  5'- gGCGUUUGcCGAUuAUGCGCUCGUGu- -3'
miRNA:   3'- -CGCGAAUuGCUGcUGCGCGGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 85965 0.68 0.911064
Target:  5'- -aGacaUUGAUuACGACGgGCCCGUAAAg -3'
miRNA:   3'- cgCg--AAUUGcUGCUGCgCGGGCAUUU- -5'
22880 5' -52.6 NC_005137.2 + 26700 0.68 0.917125
Target:  5'- gGCGCUgAACGGCGGCGaagaaG-CCGUGc- -3'
miRNA:   3'- -CGCGAaUUGCUGCUGCg----CgGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 99539 0.68 0.917125
Target:  5'- cGCGUUUAACuGCGucaGCGCGCUCGc--- -3'
miRNA:   3'- -CGCGAAUUGcUGC---UGCGCGGGCauuu -5'
22880 5' -52.6 NC_005137.2 + 6617 0.68 0.922932
Target:  5'- aCGCUUuuCGAuauCGACuGUGCUCGUAAAg -3'
miRNA:   3'- cGCGAAuuGCU---GCUG-CGCGGGCAUUU- -5'
22880 5' -52.6 NC_005137.2 + 78889 0.68 0.928484
Target:  5'- uGCGCUUGGCG--GGCGUGCCUa---- -3'
miRNA:   3'- -CGCGAAUUGCugCUGCGCGGGcauuu -5'
22880 5' -52.6 NC_005137.2 + 6612 0.68 0.933781
Target:  5'- cGCGCUgaAACGACGcGCGCGCagcaugaCGUu-- -3'
miRNA:   3'- -CGCGAa-UUGCUGC-UGCGCGg------GCAuuu -5'
22880 5' -52.6 NC_005137.2 + 85892 0.68 0.933781
Target:  5'- -aGUUguGCGACGcgucGCGCGCCCGcGAGu -3'
miRNA:   3'- cgCGAauUGCUGC----UGCGCGGGCaUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.