miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22880 5' -52.6 NC_005137.2 + 30851 0.78 0.427855
Target:  5'- -aGC-UGACGAccCGGCGCGCCCGUAc- -3'
miRNA:   3'- cgCGaAUUGCU--GCUGCGCGGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 32881 0.71 0.792384
Target:  5'- cGCGCgu-ACGACGACGCGguagCCGg--- -3'
miRNA:   3'- -CGCGaauUGCUGCUGCGCg---GGCauuu -5'
22880 5' -52.6 NC_005137.2 + 33020 0.67 0.938823
Target:  5'- gGCGCacccACGcCG-CGCGCCCGUu-- -3'
miRNA:   3'- -CGCGaau-UGCuGCuGCGCGGGCAuuu -5'
22880 5' -52.6 NC_005137.2 + 34516 0.73 0.713215
Target:  5'- aGCGCccgugGAC-ACGACGCGCaCCGUGu- -3'
miRNA:   3'- -CGCGaa---UUGcUGCUGCGCG-GGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 35492 0.7 0.848882
Target:  5'- aGCGCaaguCGccaccggccacgucaGCGAUGCGCCCGUGc- -3'
miRNA:   3'- -CGCGaauuGC---------------UGCUGCGCGGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 35728 0.67 0.943611
Target:  5'- cGUGCUUAAUcGCGACaCGUCgGUAAAu -3'
miRNA:   3'- -CGCGAAUUGcUGCUGcGCGGgCAUUU- -5'
22880 5' -52.6 NC_005137.2 + 37544 0.69 0.88432
Target:  5'- gGCGC-UGGCG-CGcacCGUGCCCGUAu- -3'
miRNA:   3'- -CGCGaAUUGCuGCu--GCGCGGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 40613 0.66 0.9703
Target:  5'- gGCGaCgaccAACGugGACGCGCUCu---- -3'
miRNA:   3'- -CGC-Gaa--UUGCugCUGCGCGGGcauuu -5'
22880 5' -52.6 NC_005137.2 + 43800 0.66 0.969389
Target:  5'- cCGaCUUucAGCGACGGCacgagcagccgcccGCGCCCGUcGAa -3'
miRNA:   3'- cGC-GAA--UUGCUGCUG--------------CGCGGGCAuUU- -5'
22880 5' -52.6 NC_005137.2 + 48170 0.67 0.945456
Target:  5'- -gGCUUGcgaauuauaauauccACGGCGACGUGUgCGUGu- -3'
miRNA:   3'- cgCGAAU---------------UGCUGCUGCGCGgGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 56339 0.72 0.763579
Target:  5'- cGUGCUUGccuguuCGACGACGCGguaaCCCGUc-- -3'
miRNA:   3'- -CGCGAAUu-----GCUGCUGCGC----GGGCAuuu -5'
22880 5' -52.6 NC_005137.2 + 56595 0.66 0.967187
Target:  5'- aCGC--GACgGGCGACGUGCUCGaUAAAa -3'
miRNA:   3'- cGCGaaUUG-CUGCUGCGCGGGC-AUUU- -5'
22880 5' -52.6 NC_005137.2 + 56668 0.69 0.891374
Target:  5'- cGUGCUUGcCGACGGCGCuGUggaCGUGAc -3'
miRNA:   3'- -CGCGAAUuGCUGCUGCG-CGg--GCAUUu -5'
22880 5' -52.6 NC_005137.2 + 60872 0.77 0.494829
Target:  5'- aGCGCUauuuUAGCGGaauguauuCGACGCGCUCGUGGu -3'
miRNA:   3'- -CGCGA----AUUGCU--------GCUGCGCGGGCAUUu -5'
22880 5' -52.6 NC_005137.2 + 62619 0.75 0.587097
Target:  5'- uGUGCU---CGGcCGACGCGUCCGUAGAu -3'
miRNA:   3'- -CGCGAauuGCU-GCUGCGCGGGCAUUU- -5'
22880 5' -52.6 NC_005137.2 + 63023 0.66 0.9703
Target:  5'- cGCGCguggccAACGACGACGUGCg------ -3'
miRNA:   3'- -CGCGaa----UUGCUGCUGCGCGggcauuu -5'
22880 5' -52.6 NC_005137.2 + 64134 0.67 0.95648
Target:  5'- cGUGCUUAugacguGCGugGaaGCGCaCCCGUGc- -3'
miRNA:   3'- -CGCGAAU------UGCugC--UGCGcGGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 70154 1.08 0.005756
Target:  5'- aGCGCUUAACGACGACGCGCCCGUAAAc -3'
miRNA:   3'- -CGCGAAUUGCUGCUGCGCGGGCAUUU- -5'
22880 5' -52.6 NC_005137.2 + 71060 0.67 0.947706
Target:  5'- uGCGCaucAACGA-GGCGCGCCagcucagCGUAGAa -3'
miRNA:   3'- -CGCGaa-UUGCUgCUGCGCGG-------GCAUUU- -5'
22880 5' -52.6 NC_005137.2 + 72797 0.67 0.95648
Target:  5'- aCGCgUUGGCGGCG-CGCGCugCCGUc-- -3'
miRNA:   3'- cGCG-AAUUGCUGCuGCGCG--GGCAuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.