miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22880 5' -52.6 NC_005137.2 + 85892 0.68 0.933781
Target:  5'- -aGUUguGCGACGcgucGCGCGCCCGcGAGu -3'
miRNA:   3'- cgCGAauUGCUGC----UGCGCGGGCaUUU- -5'
22880 5' -52.6 NC_005137.2 + 8456 0.67 0.93833
Target:  5'- uCGCUUAcgcaauuGCGACGcgccgauaACGUGCCCGa--- -3'
miRNA:   3'- cGCGAAU-------UGCUGC--------UGCGCGGGCauuu -5'
22880 5' -52.6 NC_005137.2 + 33020 0.67 0.938823
Target:  5'- gGCGCacccACGcCG-CGCGCCCGUu-- -3'
miRNA:   3'- -CGCGaau-UGCuGCuGCGCGGGCAuuu -5'
22880 5' -52.6 NC_005137.2 + 2327 0.67 0.938823
Target:  5'- cGCGCUcGugGA-GGCGUGCauggCCGUAAAc -3'
miRNA:   3'- -CGCGAaUugCUgCUGCGCG----GGCAUUU- -5'
22880 5' -52.6 NC_005137.2 + 75589 0.67 0.943611
Target:  5'- aCGCgg-GCGGCGcCGUGCgCGUGGAg -3'
miRNA:   3'- cGCGaauUGCUGCuGCGCGgGCAUUU- -5'
22880 5' -52.6 NC_005137.2 + 93344 0.67 0.943611
Target:  5'- cGUGCUgacCGGCGACGCGUuaGUu-- -3'
miRNA:   3'- -CGCGAauuGCUGCUGCGCGggCAuuu -5'
22880 5' -52.6 NC_005137.2 + 82232 0.67 0.943611
Target:  5'- aCGCUguGCGGCGcCGCGUCCa---- -3'
miRNA:   3'- cGCGAauUGCUGCuGCGCGGGcauuu -5'
22880 5' -52.6 NC_005137.2 + 17315 0.67 0.943611
Target:  5'- cGCGCUguGCGACGuGCGCGUCg----- -3'
miRNA:   3'- -CGCGAauUGCUGC-UGCGCGGgcauuu -5'
22880 5' -52.6 NC_005137.2 + 35728 0.67 0.943611
Target:  5'- cGUGCUUAAUcGCGACaCGUCgGUAAAu -3'
miRNA:   3'- -CGCGAAUUGcUGCUGcGCGGgCAUUU- -5'
22880 5' -52.6 NC_005137.2 + 118651 0.67 0.943611
Target:  5'- cGUGCUauggaagGugGACGACGCuguggcaaaGUCCGUGGu -3'
miRNA:   3'- -CGCGAa------UugCUGCUGCG---------CGGGCAUUu -5'
22880 5' -52.6 NC_005137.2 + 110803 0.67 0.943611
Target:  5'- cGCGCUUu-CGcaauCGACGCcGCCCGc--- -3'
miRNA:   3'- -CGCGAAuuGCu---GCUGCG-CGGGCauuu -5'
22880 5' -52.6 NC_005137.2 + 48170 0.67 0.945456
Target:  5'- -gGCUUGcgaauuauaauauccACGGCGACGUGUgCGUGu- -3'
miRNA:   3'- cgCGAAU---------------UGCUGCUGCGCGgGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 71060 0.67 0.947706
Target:  5'- uGCGCaucAACGA-GGCGCGCCagcucagCGUAGAa -3'
miRNA:   3'- -CGCGaa-UUGCUgCUGCGCGG-------GCAUUU- -5'
22880 5' -52.6 NC_005137.2 + 124936 0.67 0.948148
Target:  5'- uGUGCUUGaucgccggguuGCGAUGAacgcgGCGCCgGUGAu -3'
miRNA:   3'- -CGCGAAU-----------UGCUGCUg----CGCGGgCAUUu -5'
22880 5' -52.6 NC_005137.2 + 81807 0.67 0.952437
Target:  5'- cGCGCgucGCGuauCGAUGUGCCCa---- -3'
miRNA:   3'- -CGCGaauUGCu--GCUGCGCGGGcauuu -5'
22880 5' -52.6 NC_005137.2 + 22895 0.67 0.95648
Target:  5'- gGUGCU--GCGAuCGGCGCGCaacgCGUAc- -3'
miRNA:   3'- -CGCGAauUGCU-GCUGCGCGg---GCAUuu -5'
22880 5' -52.6 NC_005137.2 + 64134 0.67 0.95648
Target:  5'- cGUGCUUAugacguGCGugGaaGCGCaCCCGUGc- -3'
miRNA:   3'- -CGCGAAU------UGCugC--UGCGcGGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 2434 0.67 0.95648
Target:  5'- aCGCggUGGcCGACGugccCGCGCCCGa--- -3'
miRNA:   3'- cGCGa-AUU-GCUGCu---GCGCGGGCauuu -5'
22880 5' -52.6 NC_005137.2 + 72797 0.67 0.95648
Target:  5'- aCGCgUUGGCGGCG-CGCGCugCCGUc-- -3'
miRNA:   3'- cGCG-AAUUGCUGCuGCGCG--GGCAuuu -5'
22880 5' -52.6 NC_005137.2 + 110586 0.66 0.958791
Target:  5'- gGCGCgcccauccuguGCGACGACcaguugGUGUCCGUGGu -3'
miRNA:   3'- -CGCGaau--------UGCUGCUG------CGCGGGCAUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.