miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22880 5' -52.6 NC_005137.2 + 73910 0.69 0.891374
Target:  5'- gGCGUcau-CGuuuUGGCGCGCCCGUGc- -3'
miRNA:   3'- -CGCGaauuGCu--GCUGCGCGGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 75589 0.67 0.943611
Target:  5'- aCGCgg-GCGGCGcCGUGCgCGUGGAg -3'
miRNA:   3'- cGCGaauUGCUGCuGCGCGgGCAUUU- -5'
22880 5' -52.6 NC_005137.2 + 78889 0.68 0.928484
Target:  5'- uGCGCUUGGCG--GGCGUGCCUa---- -3'
miRNA:   3'- -CGCGAAUUGCugCUGCGCGGGcauuu -5'
22880 5' -52.6 NC_005137.2 + 80246 0.8 0.319017
Target:  5'- uGCGUUUGAUGACGGCGCGaacgCCGUGGc -3'
miRNA:   3'- -CGCGAAUUGCUGCUGCGCg---GGCAUUu -5'
22880 5' -52.6 NC_005137.2 + 81807 0.67 0.952437
Target:  5'- cGCGCgucGCGuauCGAUGUGCCCa---- -3'
miRNA:   3'- -CGCGaauUGCu--GCUGCGCGGGcauuu -5'
22880 5' -52.6 NC_005137.2 + 82232 0.67 0.943611
Target:  5'- aCGCUguGCGGCGcCGCGUCCa---- -3'
miRNA:   3'- cGCGAauUGCUGCuGCGCGGGcauuu -5'
22880 5' -52.6 NC_005137.2 + 85892 0.68 0.933781
Target:  5'- -aGUUguGCGACGcgucGCGCGCCCGcGAGu -3'
miRNA:   3'- cgCGAauUGCUGC----UGCGCGGGCaUUU- -5'
22880 5' -52.6 NC_005137.2 + 85965 0.68 0.911064
Target:  5'- -aGacaUUGAUuACGACGgGCCCGUAAAg -3'
miRNA:   3'- cgCg--AAUUGcUGCUGCgCGGGCAUUU- -5'
22880 5' -52.6 NC_005137.2 + 87040 0.69 0.8695
Target:  5'- gGCGaguacaacaUGGCgGugGACGCGCCCGUuGAa -3'
miRNA:   3'- -CGCga-------AUUG-CugCUGCGCGGGCAuUU- -5'
22880 5' -52.6 NC_005137.2 + 88345 0.7 0.828589
Target:  5'- cGCGCUUGGCGu---CGCGCCaaaGUAGu -3'
miRNA:   3'- -CGCGAAUUGCugcuGCGCGGg--CAUUu -5'
22880 5' -52.6 NC_005137.2 + 89184 0.74 0.618724
Target:  5'- aGCGCUaacaAACG-CGugGCGCgCCGUGAc -3'
miRNA:   3'- -CGCGAa---UUGCuGCugCGCG-GGCAUUu -5'
22880 5' -52.6 NC_005137.2 + 93344 0.67 0.943611
Target:  5'- cGUGCUgacCGGCGACGCGUuaGUu-- -3'
miRNA:   3'- -CGCGAauuGCUGCUGCGCGggCAuuu -5'
22880 5' -52.6 NC_005137.2 + 94971 0.66 0.973196
Target:  5'- aCGCUuuUAACGcc--CGCGCCCGUGu- -3'
miRNA:   3'- cGCGA--AUUGCugcuGCGCGGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 95290 0.71 0.819802
Target:  5'- cGCGaUUAagcACGACaACGCGCCCGUu-- -3'
miRNA:   3'- -CGCgAAU---UGCUGcUGCGCGGGCAuuu -5'
22880 5' -52.6 NC_005137.2 + 96405 0.78 0.437099
Target:  5'- cGCGCcgAccgcuacccgcGCGGCGACGCGCCCGc--- -3'
miRNA:   3'- -CGCGaaU-----------UGCUGCUGCGCGGGCauuu -5'
22880 5' -52.6 NC_005137.2 + 97990 0.74 0.629299
Target:  5'- gGCGCgcGGCGugGGUGCGCCCGc--- -3'
miRNA:   3'- -CGCGaaUUGCugCUGCGCGGGCauuu -5'
22880 5' -52.6 NC_005137.2 + 99301 0.66 0.967187
Target:  5'- uGCGCUUcAugGugGGCGgGCCg----- -3'
miRNA:   3'- -CGCGAA-UugCugCUGCgCGGgcauuu -5'
22880 5' -52.6 NC_005137.2 + 99539 0.68 0.917125
Target:  5'- cGCGUUUAACuGCGucaGCGCGCUCGc--- -3'
miRNA:   3'- -CGCGAAUUGcUGC---UGCGCGGGCauuu -5'
22880 5' -52.6 NC_005137.2 + 104366 0.66 0.967187
Target:  5'- cGCGCU--GCGACG-CGCacGCuuGUAc- -3'
miRNA:   3'- -CGCGAauUGCUGCuGCG--CGggCAUuu -5'
22880 5' -52.6 NC_005137.2 + 107099 0.72 0.743736
Target:  5'- uGCGCUgguuggagGGCGAUGACcCGgCCGUAGAu -3'
miRNA:   3'- -CGCGAa-------UUGCUGCUGcGCgGGCAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.