miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22880 5' -52.6 NC_005137.2 + 73910 0.69 0.891374
Target:  5'- gGCGUcau-CGuuuUGGCGCGCCCGUGc- -3'
miRNA:   3'- -CGCGaauuGCu--GCUGCGCGGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 37544 0.69 0.88432
Target:  5'- gGCGC-UGGCG-CGcacCGUGCCCGUAu- -3'
miRNA:   3'- -CGCGaAUUGCuGCu--GCGCGGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 128913 0.7 0.853771
Target:  5'- cCGCccAAUGAUGAggacagccaaCGCGCCCGUGAu -3'
miRNA:   3'- cGCGaaUUGCUGCU----------GCGCGGGCAUUu -5'
22880 5' -52.6 NC_005137.2 + 35492 0.7 0.848882
Target:  5'- aGCGCaaguCGccaccggccacgucaGCGAUGCGCCCGUGc- -3'
miRNA:   3'- -CGCGaauuGC---------------UGCUGCGCGGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 88345 0.7 0.828589
Target:  5'- cGCGCUUGGCGu---CGCGCCaaaGUAGu -3'
miRNA:   3'- -CGCGAAUUGCugcuGCGCGGg--CAUUu -5'
22880 5' -52.6 NC_005137.2 + 95290 0.71 0.819802
Target:  5'- cGCGaUUAagcACGACaACGCGCCCGUu-- -3'
miRNA:   3'- -CGCgAAU---UGCUGcUGCGCGGGCAuuu -5'
22880 5' -52.6 NC_005137.2 + 18304 0.71 0.819802
Target:  5'- uGgGC--GugGACGACGUGCCCGc--- -3'
miRNA:   3'- -CgCGaaUugCUGCUGCGCGGGCauuu -5'
22880 5' -52.6 NC_005137.2 + 107099 0.72 0.743736
Target:  5'- uGCGCUgguuggagGGCGAUGACcCGgCCGUAGAu -3'
miRNA:   3'- -CGCGAa-------UUGCUGCUGcGCgGGCAUUU- -5'
22880 5' -52.6 NC_005137.2 + 26303 0.72 0.743736
Target:  5'- cGCGUacAACGGCGGCGCGCUgGa--- -3'
miRNA:   3'- -CGCGaaUUGCUGCUGCGCGGgCauuu -5'
22880 5' -52.6 NC_005137.2 + 34516 0.73 0.713215
Target:  5'- aGCGCccgugGAC-ACGACGCGCaCCGUGu- -3'
miRNA:   3'- -CGCGaa---UUGcUGCUGCGCG-GGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 89184 0.74 0.618724
Target:  5'- aGCGCUaacaAACG-CGugGCGCgCCGUGAc -3'
miRNA:   3'- -CGCGAa---UUGCuGCugCGCG-GGCAUUu -5'
22880 5' -52.6 NC_005137.2 + 62619 0.75 0.587097
Target:  5'- uGUGCU---CGGcCGACGCGUCCGUAGAu -3'
miRNA:   3'- -CGCGAauuGCU-GCUGCGCGGGCAUUU- -5'
22880 5' -52.6 NC_005137.2 + 30738 0.76 0.52497
Target:  5'- gGCGUgaaugccGCGACG-CGCGCCCGUGc- -3'
miRNA:   3'- -CGCGaau----UGCUGCuGCGCGGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 30851 0.78 0.427855
Target:  5'- -aGC-UGACGAccCGGCGCGCCCGUAc- -3'
miRNA:   3'- cgCGaAUUGCU--GCUGCGCGGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 70154 1.08 0.005756
Target:  5'- aGCGCUUAACGACGACGCGCCCGUAAAc -3'
miRNA:   3'- -CGCGAAUUGCUGCUGCGCGGGCAUUU- -5'
22880 5' -52.6 NC_005137.2 + 71060 0.67 0.947706
Target:  5'- uGCGCaucAACGA-GGCGCGCCagcucagCGUAGAa -3'
miRNA:   3'- -CGCGaa-UUGCUgCUGCGCGG-------GCAUUU- -5'
22880 5' -52.6 NC_005137.2 + 94971 0.66 0.973196
Target:  5'- aCGCUuuUAACGcc--CGCGCCCGUGu- -3'
miRNA:   3'- cGCGA--AUUGCugcuGCGCGGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 63023 0.66 0.9703
Target:  5'- cGCGCguggccAACGACGACGUGCg------ -3'
miRNA:   3'- -CGCGaa----UUGCUGCUGCGCGggcauuu -5'
22880 5' -52.6 NC_005137.2 + 40613 0.66 0.9703
Target:  5'- gGCGaCgaccAACGugGACGCGCUCu---- -3'
miRNA:   3'- -CGC-Gaa--UUGCugCUGCGCGGGcauuu -5'
22880 5' -52.6 NC_005137.2 + 123998 0.66 0.967187
Target:  5'- cGCGCgu-GCGccACGuuGUGCCCGgcGAc -3'
miRNA:   3'- -CGCGaauUGC--UGCugCGCGGGCauUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.