miRNA display CGI


Results 61 - 72 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22880 5' -52.6 NC_005137.2 + 108150 0.66 0.96385
Target:  5'- cGgGCggcGGCGGCGucgguaugcGCGCGCCCGc--- -3'
miRNA:   3'- -CgCGaa-UUGCUGC---------UGCGCGGGCauuu -5'
22880 5' -52.6 NC_005137.2 + 108573 0.79 0.383435
Target:  5'- aCGUgau-CGGCGGCGCGCCCGUGu- -3'
miRNA:   3'- cGCGaauuGCUGCUGCGCGGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 110586 0.66 0.958791
Target:  5'- gGCGCgcccauccuguGCGACGACcaguugGUGUCCGUGGu -3'
miRNA:   3'- -CGCGaau--------UGCUGCUG------CGCGGGCAUUu -5'
22880 5' -52.6 NC_005137.2 + 110643 0.72 0.743736
Target:  5'- cGCGCc-GACGGCGuuuggcuUGUGCCCGUGAc -3'
miRNA:   3'- -CGCGaaUUGCUGCu------GCGCGGGCAUUu -5'
22880 5' -52.6 NC_005137.2 + 110803 0.67 0.943611
Target:  5'- cGCGCUUu-CGcaauCGACGCcGCCCGc--- -3'
miRNA:   3'- -CGCGAAuuGCu---GCUGCG-CGGGCauuu -5'
22880 5' -52.6 NC_005137.2 + 112399 0.69 0.8695
Target:  5'- uGCGCgaucGCGcACGGCGCGCCauuGUGc- -3'
miRNA:   3'- -CGCGaau-UGC-UGCUGCGCGGg--CAUuu -5'
22880 5' -52.6 NC_005137.2 + 118099 0.68 0.911064
Target:  5'- gGCGUUUGcCGAUuAUGCGCUCGUGu- -3'
miRNA:   3'- -CGCGAAUuGCUGcUGCGCGGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 118651 0.67 0.943611
Target:  5'- cGUGCUauggaagGugGACGACGCuguggcaaaGUCCGUGGu -3'
miRNA:   3'- -CGCGAa------UugCUGCUGCG---------CGGGCAUUu -5'
22880 5' -52.6 NC_005137.2 + 123998 0.66 0.967187
Target:  5'- cGCGCgu-GCGccACGuuGUGCCCGgcGAc -3'
miRNA:   3'- -CGCGaauUGC--UGCugCGCGGGCauUU- -5'
22880 5' -52.6 NC_005137.2 + 124936 0.67 0.948148
Target:  5'- uGUGCUUGaucgccggguuGCGAUGAacgcgGCGCCgGUGAu -3'
miRNA:   3'- -CGCGAAU-----------UGCUGCUg----CGCGGgCAUUu -5'
22880 5' -52.6 NC_005137.2 + 128913 0.7 0.853771
Target:  5'- cCGCccAAUGAUGAggacagccaaCGCGCCCGUGAu -3'
miRNA:   3'- cGCGaaUUGCUGCU----------GCGCGGGCAUUu -5'
22880 5' -52.6 NC_005137.2 + 130957 0.72 0.752722
Target:  5'- cGCGCUUuuauacaAGCGguuGACGCGCCCGa--- -3'
miRNA:   3'- -CGCGAA-------UUGCug-CUGCGCGGGCauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.