miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22881 3' -45.3 NC_005137.2 + 111513 0.66 0.999987
Target:  5'- uGAAGAAGuggacgcAGAGCGgcuUGUgauguuuuUGCCGAGCu -3'
miRNA:   3'- gCUUUUUC-------UUUCGCa--ACA--------GCGGCUUG- -5'
22881 3' -45.3 NC_005137.2 + 110734 0.66 0.999982
Target:  5'- -------cAGAGCGcUUGUgCGCCGGGCg -3'
miRNA:   3'- gcuuuuucUUUCGC-AACA-GCGGCUUG- -5'
22881 3' -45.3 NC_005137.2 + 52072 0.66 0.999975
Target:  5'- ------cGAAAcGCGUUGUCGCaCGGuACa -3'
miRNA:   3'- gcuuuuuCUUU-CGCAACAGCG-GCU-UG- -5'
22881 3' -45.3 NC_005137.2 + 82737 0.66 0.999966
Target:  5'- aUGAuuGcGAAGGCGaUGaCGCCGAGg -3'
miRNA:   3'- -GCUuuUuCUUUCGCaACaGCGGCUUg -5'
22881 3' -45.3 NC_005137.2 + 6994 0.67 0.999954
Target:  5'- -----cGGAcGAGCG--GUCGCCGGGCa -3'
miRNA:   3'- gcuuuuUCU-UUCGCaaCAGCGGCUUG- -5'
22881 3' -45.3 NC_005137.2 + 70400 0.67 0.999938
Target:  5'- uCGguGAAGGAGGUGUUGgcgaaggCGUCGGu- -3'
miRNA:   3'- -GCuuUUUCUUUCGCAACa------GCGGCUug -5'
22881 3' -45.3 NC_005137.2 + 5214 0.67 0.999917
Target:  5'- aGAAAuacAAAGCGUUcUUGCCGAAa -3'
miRNA:   3'- gCUUUuucUUUCGCAAcAGCGGCUUg -5'
22881 3' -45.3 NC_005137.2 + 78808 0.67 0.999891
Target:  5'- gCGGAGc-GGGAGCGgcGUCGUCGGu- -3'
miRNA:   3'- -GCUUUuuCUUUCGCaaCAGCGGCUug -5'
22881 3' -45.3 NC_005137.2 + 14686 0.68 0.999759
Target:  5'- aCGAcuuGAAuGAAGUGUUGcaaGCCGGACa -3'
miRNA:   3'- -GCUu--UUUcUUUCGCAACag-CGGCUUG- -5'
22881 3' -45.3 NC_005137.2 + 111853 0.69 0.999503
Target:  5'- uGAuuAAcAAGGCGUUGUUGCUGGc- -3'
miRNA:   3'- gCUuuUUcUUUCGCAACAGCGGCUug -5'
22881 3' -45.3 NC_005137.2 + 110933 0.69 0.998817
Target:  5'- cCGAcAAAGAAGGCGUgccCGUCGAu- -3'
miRNA:   3'- -GCUuUUUCUUUCGCAacaGCGGCUug -5'
22881 3' -45.3 NC_005137.2 + 130506 0.7 0.99745
Target:  5'- gCGAAGGAauauuGGGAGUGUUGUacaacaCGCUGGGCa -3'
miRNA:   3'- -GCUUUUU-----CUUUCGCAACA------GCGGCUUG- -5'
22881 3' -45.3 NC_005137.2 + 68028 1.13 0.017262
Target:  5'- cCGAAAAAGAAAGCGUUGUCGCCGAACg -3'
miRNA:   3'- -GCUUUUUCUUUCGCAACAGCGGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.