miRNA display CGI


Results 41 - 60 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22882 3' -53.9 NC_005137.2 + 13428 0.69 0.885479
Target:  5'- gUCGCCCGUCAGcCGCAccggcGGCGCacuuuGcCGGu -3'
miRNA:   3'- -AGCGGGCAGUU-GUGU-----UUGCG-----CaGCCc -5'
22882 3' -53.9 NC_005137.2 + 100147 0.69 0.855919
Target:  5'- cUCGCCCacg--UACGGGCGCGcCGGGu -3'
miRNA:   3'- -AGCGGGcaguuGUGUUUGCGCaGCCC- -5'
22882 3' -53.9 NC_005137.2 + 88128 0.69 0.855919
Target:  5'- aCGCCC-UCAACGgAcACGCGaUCGGc -3'
miRNA:   3'- aGCGGGcAGUUGUgUuUGCGC-AGCCc -5'
22882 3' -53.9 NC_005137.2 + 109007 0.69 0.863632
Target:  5'- aCGCUgGUCAuCGCGAuaACGCGcgUGGGu -3'
miRNA:   3'- aGCGGgCAGUuGUGUU--UGCGCa-GCCC- -5'
22882 3' -53.9 NC_005137.2 + 100254 0.69 0.871133
Target:  5'- -gGCgCCG-CAACGCAcgggcGCGCGUCGcGGc -3'
miRNA:   3'- agCG-GGCaGUUGUGUu----UGCGCAGC-CC- -5'
22882 3' -53.9 NC_005137.2 + 31010 0.69 0.878417
Target:  5'- aCGCUgGUCGGCGCcgcuaCGUCGGGc -3'
miRNA:   3'- aGCGGgCAGUUGUGuuugcGCAGCCC- -5'
22882 3' -53.9 NC_005137.2 + 9190 0.69 0.885479
Target:  5'- gUUGCCCGUUacaguugugAugGCAAACGCGaUGGc -3'
miRNA:   3'- -AGCGGGCAG---------UugUGUUUGCGCaGCCc -5'
22882 3' -53.9 NC_005137.2 + 37672 0.69 0.885479
Target:  5'- gUCGCCgGUCAGCACGAugcuaGCGC-UCa-- -3'
miRNA:   3'- -AGCGGgCAGUUGUGUU-----UGCGcAGccc -5'
22882 3' -53.9 NC_005137.2 + 85681 0.69 0.885479
Target:  5'- gUUGUagaCGUCGACACGuuuGCGCGUCa-- -3'
miRNA:   3'- -AGCGg--GCAGUUGUGUu--UGCGCAGccc -5'
22882 3' -53.9 NC_005137.2 + 103563 0.7 0.814418
Target:  5'- aUUGCgCGUaCGAgACAAGCGCGU-GGGc -3'
miRNA:   3'- -AGCGgGCA-GUUgUGUUUGCGCAgCCC- -5'
22882 3' -53.9 NC_005137.2 + 34517 0.71 0.748571
Target:  5'- gCGCCCGUgGACACG-ACGCGcaccguguugcguUCGcGGu -3'
miRNA:   3'- aGCGGGCAgUUGUGUuUGCGC-------------AGC-CC- -5'
22882 3' -53.9 NC_005137.2 + 78636 0.72 0.723971
Target:  5'- -gGCCCGUCAugucggagaaaaacuGCACAAuaaGCG-CGGGc -3'
miRNA:   3'- agCGGGCAGU---------------UGUGUUug-CGCaGCCC- -5'
22882 3' -53.9 NC_005137.2 + 37560 0.72 0.729926
Target:  5'- gUGCCCGUauGCAucccCGAACGCauGUCGGGu -3'
miRNA:   3'- aGCGGGCAguUGU----GUUUGCG--CAGCCC- -5'
22882 3' -53.9 NC_005137.2 + 68381 0.72 0.709967
Target:  5'- ---aCCGUCAucUACGGACGCGUCGGc -3'
miRNA:   3'- agcgGGCAGUu-GUGUUUGCGCAGCCc -5'
22882 3' -53.9 NC_005137.2 + 93508 0.72 0.719985
Target:  5'- gUCGUagCCGaCGGCGCAAaugcACGCGUCGGc -3'
miRNA:   3'- -AGCG--GGCaGUUGUGUU----UGCGCAGCCc -5'
22882 3' -53.9 NC_005137.2 + 948 0.72 0.729926
Target:  5'- gCGCCCGUCAucgGCGCAauAAgGCG-CGGc -3'
miRNA:   3'- aGCGGGCAGU---UGUGU--UUgCGCaGCCc -5'
22882 3' -53.9 NC_005137.2 + 90857 0.73 0.679551
Target:  5'- cUCGCCCGUCAucaGC-AACGUGuuuuuguucUCGGGc -3'
miRNA:   3'- -AGCGGGCAGUug-UGuUUGCGC---------AGCCC- -5'
22882 3' -53.9 NC_005137.2 + 65437 0.73 0.689741
Target:  5'- gUUGCCCGUguACACAuACGCGUUu-- -3'
miRNA:   3'- -AGCGGGCAguUGUGUuUGCGCAGccc -5'
22882 3' -53.9 NC_005137.2 + 84561 0.74 0.638482
Target:  5'- gUGCaacaCGUCGGCGCGuucgGGCGgGUCGGGc -3'
miRNA:   3'- aGCGg---GCAGUUGUGU----UUGCgCAGCCC- -5'
22882 3' -53.9 NC_005137.2 + 67540 0.76 0.477969
Target:  5'- aCGCCgCGaggCGGCACAAACGCGcgccgagCGGGa -3'
miRNA:   3'- aGCGG-GCa--GUUGUGUUUGCGCa------GCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.