miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22882 3' -53.9 NC_005137.2 + 31010 0.69 0.878417
Target:  5'- aCGCUgGUCGGCGCcgcuaCGUCGGGc -3'
miRNA:   3'- aGCGGgCAGUUGUGuuugcGCAGCCC- -5'
22882 3' -53.9 NC_005137.2 + 100254 0.69 0.871133
Target:  5'- -gGCgCCG-CAACGCAcgggcGCGCGUCGcGGc -3'
miRNA:   3'- agCG-GGCaGUUGUGUu----UGCGCAGC-CC- -5'
22882 3' -53.9 NC_005137.2 + 109007 0.69 0.863632
Target:  5'- aCGCUgGUCAuCGCGAuaACGCGcgUGGGu -3'
miRNA:   3'- aGCGGgCAGUuGUGUU--UGCGCa-GCCC- -5'
22882 3' -53.9 NC_005137.2 + 88128 0.69 0.855919
Target:  5'- aCGCCC-UCAACGgAcACGCGaUCGGc -3'
miRNA:   3'- aGCGGGcAGUUGUgUuUGCGC-AGCCc -5'
22882 3' -53.9 NC_005137.2 + 948 0.72 0.729926
Target:  5'- gCGCCCGUCAucgGCGCAauAAgGCG-CGGc -3'
miRNA:   3'- aGCGGGCAGU---UGUGU--UUgCGCaGCCc -5'
22882 3' -53.9 NC_005137.2 + 93508 0.72 0.719985
Target:  5'- gUCGUagCCGaCGGCGCAAaugcACGCGUCGGc -3'
miRNA:   3'- -AGCG--GGCaGUUGUGUU----UGCGCAGCCc -5'
22882 3' -53.9 NC_005137.2 + 43832 0.68 0.915568
Target:  5'- gCGCCCGUCgAACGCGAuuugcacgugcgaaACGcCG-CGGa -3'
miRNA:   3'- aGCGGGCAG-UUGUGUU--------------UGC-GCaGCCc -5'
22882 3' -53.9 NC_005137.2 + 99871 0.68 0.916732
Target:  5'- cUGUCCGUCAaacucguACACcGACGCaUCGGu -3'
miRNA:   3'- aGCGGGCAGU-------UGUGuUUGCGcAGCCc -5'
22882 3' -53.9 NC_005137.2 + 49731 0.66 0.959526
Target:  5'- uUCGUCCG-CuuCAUcgGCGCGUCGu- -3'
miRNA:   3'- -AGCGGGCaGuuGUGuuUGCGCAGCcc -5'
22882 3' -53.9 NC_005137.2 + 6847 0.66 0.959526
Target:  5'- gCGUCCGUguuGCuauCGAACGUGUCgcuGGGg -3'
miRNA:   3'- aGCGGGCAgu-UGu--GUUUGCGCAG---CCC- -5'
22882 3' -53.9 NC_005137.2 + 98006 0.66 0.959526
Target:  5'- gCGCCCGccaaGugGCcAGCGUgcacGUCGGGc -3'
miRNA:   3'- aGCGGGCag--UugUGuUUGCG----CAGCCC- -5'
22882 3' -53.9 NC_005137.2 + 68742 0.66 0.955779
Target:  5'- gUUG-CCGUCGAC-C-AACGCGUUGGu -3'
miRNA:   3'- -AGCgGGCAGUUGuGuUUGCGCAGCCc -5'
22882 3' -53.9 NC_005137.2 + 76581 0.66 0.955779
Target:  5'- aCGCCCGaUC-ACAUGcuCGUGUUGGa -3'
miRNA:   3'- aGCGGGC-AGuUGUGUuuGCGCAGCCc -5'
22882 3' -53.9 NC_005137.2 + 27911 0.66 0.955779
Target:  5'- aUCGCCCGgCAAC-CAAuuGCGCacgCGGu -3'
miRNA:   3'- -AGCGGGCaGUUGuGUU--UGCGca-GCCc -5'
22882 3' -53.9 NC_005137.2 + 56574 0.66 0.951802
Target:  5'- uUUGCgCCGUUAugGgAcccGACGCGaCGGGc -3'
miRNA:   3'- -AGCG-GGCAGUugUgU---UUGCGCaGCCC- -5'
22882 3' -53.9 NC_005137.2 + 110628 0.66 0.947592
Target:  5'- aCGgCCGU--GCACAAACGCGcCGa- -3'
miRNA:   3'- aGCgGGCAguUGUGUUUGCGCaGCcc -5'
22882 3' -53.9 NC_005137.2 + 31704 0.67 0.933537
Target:  5'- gUCGCaccgaCGUguGCACGuuCGCGUCGu- -3'
miRNA:   3'- -AGCGg----GCAguUGUGUuuGCGCAGCcc -5'
22882 3' -53.9 NC_005137.2 + 10720 0.67 0.922962
Target:  5'- gUGCaCCG-CAuCGCGcACGCGUCGGc -3'
miRNA:   3'- aGCG-GGCaGUuGUGUuUGCGCAGCCc -5'
22882 3' -53.9 NC_005137.2 + 18268 0.67 0.922962
Target:  5'- gCGUCCGUUAACACGGACaCGUUu-- -3'
miRNA:   3'- aGCGGGCAGUUGUGUUUGcGCAGccc -5'
22882 3' -53.9 NC_005137.2 + 1505 0.68 0.917311
Target:  5'- cCGCCgCG-CGGCGCcGACGCGUUGu- -3'
miRNA:   3'- aGCGG-GCaGUUGUGuUUGCGCAGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.