miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22882 3' -53.9 NC_005137.2 + 31704 0.67 0.933537
Target:  5'- gUCGCaccgaCGUguGCACGuuCGCGUCGu- -3'
miRNA:   3'- -AGCGg----GCAguUGUGUuuGCGCAGCcc -5'
22882 3' -53.9 NC_005137.2 + 101331 0.67 0.92837
Target:  5'- aCG-CCGUCAACGCAAcCGCaaacgaGUaCGGGc -3'
miRNA:   3'- aGCgGGCAGUUGUGUUuGCG------CA-GCCC- -5'
22882 3' -53.9 NC_005137.2 + 10720 0.67 0.922962
Target:  5'- gUGCaCCG-CAuCGCGcACGCGUCGGc -3'
miRNA:   3'- aGCG-GGCaGUuGUGUuUGCGCAGCCc -5'
22882 3' -53.9 NC_005137.2 + 18268 0.67 0.922962
Target:  5'- gCGUCCGUUAACACGGACaCGUUu-- -3'
miRNA:   3'- aGCGGGCAGUUGUGUUUGcGCAGccc -5'
22882 3' -53.9 NC_005137.2 + 20274 0.68 0.917311
Target:  5'- aUCGCCCGgc-GCACAAGCGC-UCu-- -3'
miRNA:   3'- -AGCGGGCaguUGUGUUUGCGcAGccc -5'
22882 3' -53.9 NC_005137.2 + 1505 0.68 0.917311
Target:  5'- cCGCCgCG-CGGCGCcGACGCGUUGu- -3'
miRNA:   3'- aGCGG-GCaGUUGUGuUUGCGCAGCcc -5'
22882 3' -53.9 NC_005137.2 + 99871 0.68 0.916732
Target:  5'- cUGUCCGUCAaacucguACACcGACGCaUCGGu -3'
miRNA:   3'- aGCGGGCAGU-------UGUGuUUGCGcAGCCc -5'
22882 3' -53.9 NC_005137.2 + 43832 0.68 0.915568
Target:  5'- gCGCCCGUCgAACGCGAuuugcacgugcgaaACGcCG-CGGa -3'
miRNA:   3'- aGCGGGCAG-UUGUGUU--------------UGC-GCaGCCc -5'
22882 3' -53.9 NC_005137.2 + 93427 0.68 0.911419
Target:  5'- gCGCCUGUacaAACcCGAcAUGCGuUCGGGg -3'
miRNA:   3'- aGCGGGCAg--UUGuGUU-UGCGC-AGCCC- -5'
22882 3' -53.9 NC_005137.2 + 117837 0.68 0.911419
Target:  5'- cCGCCacCGgggcaaccacCAGCACGGACGCGUCcGGc -3'
miRNA:   3'- aGCGG--GCa---------GUUGUGUUUGCGCAGcCC- -5'
22882 3' -53.9 NC_005137.2 + 91223 0.68 0.905287
Target:  5'- cCGCCauuGUCAGCAguGugccACGUGcCGGGg -3'
miRNA:   3'- aGCGGg--CAGUUGUguU----UGCGCaGCCC- -5'
22882 3' -53.9 NC_005137.2 + 87103 0.68 0.905287
Target:  5'- gCGgCCGUUAACaacggccaACAAGCGCcUUGGGu -3'
miRNA:   3'- aGCgGGCAGUUG--------UGUUUGCGcAGCCC- -5'
22882 3' -53.9 NC_005137.2 + 62250 0.68 0.905287
Target:  5'- gCGCCacacaagCGGCACcAACGCGUUGGu -3'
miRNA:   3'- aGCGGgca----GUUGUGuUUGCGCAGCCc -5'
22882 3' -53.9 NC_005137.2 + 110947 0.68 0.892314
Target:  5'- gUGCCCGUCGAUcaACAGAgGCuuauuuaugCGGGc -3'
miRNA:   3'- aGCGGGCAGUUG--UGUUUgCGca-------GCCC- -5'
22882 3' -53.9 NC_005137.2 + 74423 0.69 0.885479
Target:  5'- gUCGCCCGU---------CGCGUCGGGu -3'
miRNA:   3'- -AGCGGGCAguuguguuuGCGCAGCCC- -5'
22882 3' -53.9 NC_005137.2 + 73437 0.69 0.885479
Target:  5'- gCGCUgGgcUCGACGCGuucuaAACGCGgCGGGg -3'
miRNA:   3'- aGCGGgC--AGUUGUGU-----UUGCGCaGCCC- -5'
22882 3' -53.9 NC_005137.2 + 13428 0.69 0.885479
Target:  5'- gUCGCCCGUCAGcCGCAccggcGGCGCacuuuGcCGGu -3'
miRNA:   3'- -AGCGGGCAGUU-GUGU-----UUGCG-----CaGCCc -5'
22882 3' -53.9 NC_005137.2 + 37672 0.69 0.885479
Target:  5'- gUCGCCgGUCAGCACGAugcuaGCGC-UCa-- -3'
miRNA:   3'- -AGCGGgCAGUUGUGUU-----UGCGcAGccc -5'
22882 3' -53.9 NC_005137.2 + 9190 0.69 0.885479
Target:  5'- gUUGCCCGUUacaguugugAugGCAAACGCGaUGGc -3'
miRNA:   3'- -AGCGGGCAG---------UugUGUUUGCGCaGCCc -5'
22882 3' -53.9 NC_005137.2 + 85681 0.69 0.885479
Target:  5'- gUUGUagaCGUCGACACGuuuGCGCGUCa-- -3'
miRNA:   3'- -AGCGg--GCAGUUGUGUu--UGCGCAGccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.