miRNA display CGI


Results 61 - 80 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22882 5' -59.1 NC_005137.2 + 42513 0.67 0.731842
Target:  5'- uGCGCGGCGacauuccguccaauUGCGCGACgGUgaacCGCg -3'
miRNA:   3'- cCGCGCUGCgcu-----------ACGCGCUGgCA----GCG- -5'
22882 5' -59.1 NC_005137.2 + 57196 0.67 0.730889
Target:  5'- -cCGCGACGCGuuuuuggccaaccUGCaGCaGGCCGUgGCg -3'
miRNA:   3'- ccGCGCUGCGCu------------ACG-CG-CUGGCAgCG- -5'
22882 5' -59.1 NC_005137.2 + 56235 0.67 0.715537
Target:  5'- uGCGUuuugggGACGUGAUGC-CGcACCG-CGCa -3'
miRNA:   3'- cCGCG------CUGCGCUACGcGC-UGGCaGCG- -5'
22882 5' -59.1 NC_005137.2 + 35717 0.67 0.734696
Target:  5'- gGGCGCGuuGUcGUGCuuaaucGCGACaCGUCGg -3'
miRNA:   3'- -CCGCGCugCGcUACG------CGCUG-GCAGCg -5'
22882 5' -59.1 NC_005137.2 + 108104 0.67 0.744154
Target:  5'- -uUGUGguACGCGuUGCGCG-CCGaUCGCa -3'
miRNA:   3'- ccGCGC--UGCGCuACGCGCuGGC-AGCG- -5'
22882 5' -59.1 NC_005137.2 + 12881 0.67 0.75352
Target:  5'- gGGCGCGGgGCGAaacagGUGGCCGaacacgagCGCa -3'
miRNA:   3'- -CCGCGCUgCGCUacg--CGCUGGCa-------GCG- -5'
22882 5' -59.1 NC_005137.2 + 63637 0.67 0.75352
Target:  5'- cGcCGCGGCGaCGGUcGCGCaucgCGUCGCg -3'
miRNA:   3'- cC-GCGCUGC-GCUA-CGCGcug-GCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 99798 0.67 0.714571
Target:  5'- uGCGCGACcgcugguacaaggGCGAcGCG-GGCCgGUUGCg -3'
miRNA:   3'- cCGCGCUG-------------CGCUaCGCgCUGG-CAGCG- -5'
22882 5' -59.1 NC_005137.2 + 73543 0.67 0.725154
Target:  5'- cGGCGuCGugGCcucguUGCGCGGCguccaccgauuCGUaCGCg -3'
miRNA:   3'- -CCGC-GCugCGcu---ACGCGCUG-----------GCA-GCG- -5'
22882 5' -59.1 NC_005137.2 + 24319 0.67 0.715537
Target:  5'- cGGUG-GugGCGG-GCaCGGCCGUUGUc -3'
miRNA:   3'- -CCGCgCugCGCUaCGcGCUGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 95446 0.66 0.80731
Target:  5'- uGGCGCcg-GCGGUGCGUGucuugacaagcGCCGUguUGCc -3'
miRNA:   3'- -CCGCGcugCGCUACGCGC-----------UGGCA--GCG- -5'
22882 5' -59.1 NC_005137.2 + 112399 0.66 0.798673
Target:  5'- uGCGCGAuCGCGcacgGCGCG-CCaUUGUg -3'
miRNA:   3'- cCGCGCU-GCGCua--CGCGCuGGcAGCG- -5'
22882 5' -59.1 NC_005137.2 + 38770 0.66 0.798673
Target:  5'- uGGCGC-ACGCugucguugguGAUGCGCGuCaCuUCGCu -3'
miRNA:   3'- -CCGCGcUGCG----------CUACGCGCuG-GcAGCG- -5'
22882 5' -59.1 NC_005137.2 + 75966 0.66 0.771942
Target:  5'- -uCGUGACGCGgcGCGCGuugguGCaCGgCGCa -3'
miRNA:   3'- ccGCGCUGCGCuaCGCGC-----UG-GCaGCG- -5'
22882 5' -59.1 NC_005137.2 + 20376 0.66 0.789894
Target:  5'- cGcCGuCGGCGCGuuuGUGCaCGGCCGUCa- -3'
miRNA:   3'- cC-GC-GCUGCGC---UACGcGCUGGCAGcg -5'
22882 5' -59.1 NC_005137.2 + 63463 0.66 0.798673
Target:  5'- cGGCGCG-CGUu-UGUGCcGCC-UCGCg -3'
miRNA:   3'- -CCGCGCuGCGcuACGCGcUGGcAGCG- -5'
22882 5' -59.1 NC_005137.2 + 59949 0.66 0.789894
Target:  5'- uGGCGCGccuCGuUGAUGCGCaugcCCGUaccuaGCa -3'
miRNA:   3'- -CCGCGCu--GC-GCUACGCGcu--GGCAg----CG- -5'
22882 5' -59.1 NC_005137.2 + 5871 0.66 0.78098
Target:  5'- cGGUGCauugucaaGACGUucGAgcgGCGCGGcCCGcCGCu -3'
miRNA:   3'- -CCGCG--------CUGCG--CUa--CGCGCU-GGCaGCG- -5'
22882 5' -59.1 NC_005137.2 + 107053 0.66 0.771942
Target:  5'- aGGCGCucgGACGaGGUGCGCuGCgCGUuuUGCa -3'
miRNA:   3'- -CCGCG---CUGCgCUACGCGcUG-GCA--GCG- -5'
22882 5' -59.1 NC_005137.2 + 17474 0.66 0.789894
Target:  5'- gGGUGUGGgGCuGGUggugGUGCaGCCGUUGCa -3'
miRNA:   3'- -CCGCGCUgCG-CUA----CGCGcUGGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.