miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22882 5' -59.1 NC_005137.2 + 63927 0.7 0.587335
Target:  5'- cGGUuCGcACGCGGUGCGCGAauGUCcCg -3'
miRNA:   3'- -CCGcGC-UGCGCUACGCGCUggCAGcG- -5'
22882 5' -59.1 NC_005137.2 + 67361 1.12 0.001038
Target:  5'- gGGCGCGACGCGAUGCGCGACCGUCGCc -3'
miRNA:   3'- -CCGCGCUGCGCUACGCGCUGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 68446 0.69 0.626945
Target:  5'- cGGCGCagcccaugaGGCaGUGGUuCGuCGACCGUUGCg -3'
miRNA:   3'- -CCGCG---------CUG-CGCUAcGC-GCUGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 69272 0.71 0.519408
Target:  5'- cGGCGUG-CGCGGU-CGCGGCgCGUUuagGCg -3'
miRNA:   3'- -CCGCGCuGCGCUAcGCGCUG-GCAG---CG- -5'
22882 5' -59.1 NC_005137.2 + 72321 0.69 0.626945
Target:  5'- cGGCGCcacuguccgaACGCGAauUGCGCGAgCUG-CGCc -3'
miRNA:   3'- -CCGCGc---------UGCGCU--ACGCGCU-GGCaGCG- -5'
22882 5' -59.1 NC_005137.2 + 73543 0.67 0.725154
Target:  5'- cGGCGuCGugGCcucguUGCGCGGCguccaccgauuCGUaCGCg -3'
miRNA:   3'- -CCGC-GCugCGcu---ACGCGCUG-----------GCA-GCG- -5'
22882 5' -59.1 NC_005137.2 + 75583 0.72 0.47283
Target:  5'- uGGCG-GACGCGG-GCgGCG-CCGUgCGCg -3'
miRNA:   3'- -CCGCgCUGCGCUaCG-CGCuGGCA-GCG- -5'
22882 5' -59.1 NC_005137.2 + 75966 0.66 0.771942
Target:  5'- -uCGUGACGCGgcGCGCGuugguGCaCGgCGCa -3'
miRNA:   3'- ccGCGCUGCGCuaCGCGC-----UG-GCaGCG- -5'
22882 5' -59.1 NC_005137.2 + 78721 0.66 0.771942
Target:  5'- cGGCuGCGGCuucgGCGAuaagUGCGCGGucugcCCGggCGCc -3'
miRNA:   3'- -CCG-CGCUG----CGCU----ACGCGCU-----GGCa-GCG- -5'
22882 5' -59.1 NC_005137.2 + 79582 0.7 0.577493
Target:  5'- uGCGCGcCGCcGUGCGauAgCGUCGCa -3'
miRNA:   3'- cCGCGCuGCGcUACGCgcUgGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 80903 0.68 0.656714
Target:  5'- uGGCcacGCucACGCGcauuUGCGCGGCCGUggaggCGCg -3'
miRNA:   3'- -CCG---CGc-UGCGCu---ACGCGCUGGCA-----GCG- -5'
22882 5' -59.1 NC_005137.2 + 81311 0.69 0.605124
Target:  5'- cGGCcaaGCGGCGCGuaguuaccgccGCGCGccAUUGUCGCg -3'
miRNA:   3'- -CCG---CGCUGCGCua---------CGCGC--UGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 84289 0.68 0.696109
Target:  5'- uGGCGCG-CGUGGaaacgGUGuCGAuguCCGUUGCg -3'
miRNA:   3'- -CCGCGCuGCGCUa----CGC-GCU---GGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 84891 0.74 0.362861
Target:  5'- uGGgGUGACGCGugguccacgcucGUGCGUGuuGCaCGUCGCg -3'
miRNA:   3'- -CCgCGCUGCGC------------UACGCGC--UG-GCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 85895 0.7 0.538548
Target:  5'- uGUGCGACGCGucGCGCGcCCG-CGa -3'
miRNA:   3'- cCGCGCUGCGCuaCGCGCuGGCaGCg -5'
22882 5' -59.1 NC_005137.2 + 87194 0.75 0.311447
Target:  5'- gGGCGCGG-GCGGcUGCuCGuGCCGUCGCu -3'
miRNA:   3'- -CCGCGCUgCGCU-ACGcGC-UGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 87321 0.68 0.705853
Target:  5'- aGCGCGuCGCGAaacgGCGCaGCUGgccaacCGCa -3'
miRNA:   3'- cCGCGCuGCGCUa---CGCGcUGGCa-----GCG- -5'
22882 5' -59.1 NC_005137.2 + 91096 0.68 0.674509
Target:  5'- uGCGCGACGacAUGCGCGACaagacuauuaCGCa -3'
miRNA:   3'- cCGCGCUGCgcUACGCGCUGgca-------GCG- -5'
22882 5' -59.1 NC_005137.2 + 93559 0.69 0.636874
Target:  5'- aGCGCaaauACGUGGUGCGCGGCgGcaaucaCGCu -3'
miRNA:   3'- cCGCGc---UGCGCUACGCGCUGgCa-----GCG- -5'
22882 5' -59.1 NC_005137.2 + 95446 0.66 0.80731
Target:  5'- uGGCGCcg-GCGGUGCGUGucuugacaagcGCCGUguUGCc -3'
miRNA:   3'- -CCGCGcugCGCUACGCGC-----------UGGCA--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.