miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22882 5' -59.1 NC_005137.2 + 69272 0.71 0.519408
Target:  5'- cGGCGUG-CGCGGU-CGCGGCgCGUUuagGCg -3'
miRNA:   3'- -CCGCGCuGCGCUAcGCGCUG-GCAG---CG- -5'
22882 5' -59.1 NC_005137.2 + 68446 0.69 0.626945
Target:  5'- cGGCGCagcccaugaGGCaGUGGUuCGuCGACCGUUGCg -3'
miRNA:   3'- -CCGCG---------CUG-CGCUAcGC-GCUGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 67361 1.12 0.001038
Target:  5'- gGGCGCGACGCGAUGCGCGACCGUCGCc -3'
miRNA:   3'- -CCGCGCUGCGCUACGCGCUGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 63927 0.7 0.587335
Target:  5'- cGGUuCGcACGCGGUGCGCGAauGUCcCg -3'
miRNA:   3'- -CCGcGC-UGCGCUACGCGCUggCAGcG- -5'
22882 5' -59.1 NC_005137.2 + 63637 0.67 0.75352
Target:  5'- cGcCGCGGCGaCGGUcGCGCaucgCGUCGCg -3'
miRNA:   3'- cC-GCGCUGC-GCUA-CGCGcug-GCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 63463 0.66 0.798673
Target:  5'- cGGCGCG-CGUu-UGUGCcGCC-UCGCg -3'
miRNA:   3'- -CCGCGCuGCGcuACGCGcUGGcAGCG- -5'
22882 5' -59.1 NC_005137.2 + 59949 0.66 0.789894
Target:  5'- uGGCGCGccuCGuUGAUGCGCaugcCCGUaccuaGCa -3'
miRNA:   3'- -CCGCGCu--GC-GCUACGCGcu--GGCAg----CG- -5'
22882 5' -59.1 NC_005137.2 + 57196 0.67 0.730889
Target:  5'- -cCGCGACGCGuuuuuggccaaccUGCaGCaGGCCGUgGCg -3'
miRNA:   3'- ccGCGCUGCGCu------------ACG-CG-CUGGCAgCG- -5'
22882 5' -59.1 NC_005137.2 + 56235 0.67 0.715537
Target:  5'- uGCGUuuugggGACGUGAUGC-CGcACCG-CGCa -3'
miRNA:   3'- cCGCG------CUGCGCUACGcGC-UGGCaGCG- -5'
22882 5' -59.1 NC_005137.2 + 52061 0.7 0.587335
Target:  5'- uGCGCauGACGCGAaaCGCG-UUGUCGCa -3'
miRNA:   3'- cCGCG--CUGCGCUacGCGCuGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 51690 0.73 0.403034
Target:  5'- -cCGUaGACGUGAUGCGCGGCuCGuUUGCa -3'
miRNA:   3'- ccGCG-CUGCGCUACGCGCUG-GC-AGCG- -5'
22882 5' -59.1 NC_005137.2 + 45091 0.8 0.163562
Target:  5'- cGCGCGAcuugcucugccacuCGCGGgcGCGCGACgCGUCGCa -3'
miRNA:   3'- cCGCGCU--------------GCGCUa-CGCGCUG-GCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 42668 0.69 0.636874
Target:  5'- uGGCGCGACGCcaaGCGCGcaAUCGaCGg -3'
miRNA:   3'- -CCGCGCUGCGcuaCGCGC--UGGCaGCg -5'
22882 5' -59.1 NC_005137.2 + 42513 0.67 0.731842
Target:  5'- uGCGCGGCGacauuccguccaauUGCGCGACgGUgaacCGCg -3'
miRNA:   3'- cCGCGCUGCgcu-----------ACGCGCUGgCA----GCG- -5'
22882 5' -59.1 NC_005137.2 + 38770 0.66 0.798673
Target:  5'- uGGCGC-ACGCugucguugguGAUGCGCGuCaCuUCGCu -3'
miRNA:   3'- -CCGCGcUGCG----------CUACGCGCuG-GcAGCG- -5'
22882 5' -59.1 NC_005137.2 + 37543 0.67 0.744154
Target:  5'- cGGCGCuGGCGCGcacCGUGcCCGUaUGCa -3'
miRNA:   3'- -CCGCG-CUGCGCuacGCGCuGGCA-GCG- -5'
22882 5' -59.1 NC_005137.2 + 37489 0.7 0.567687
Target:  5'- cGGC-CGACGCG-UGCauuuGCG-CCGUCGg -3'
miRNA:   3'- -CCGcGCUGCGCuACG----CGCuGGCAGCg -5'
22882 5' -59.1 NC_005137.2 + 35717 0.67 0.734696
Target:  5'- gGGCGCGuuGUcGUGCuuaaucGCGACaCGUCGg -3'
miRNA:   3'- -CCGCGCugCGcUACG------CGCUG-GCAGCg -5'
22882 5' -59.1 NC_005137.2 + 34867 0.71 0.491222
Target:  5'- cGGCGgGcaACGCGAUGCGCaugggcguACCGUaCGUu -3'
miRNA:   3'- -CCGCgC--UGCGCUACGCGc-------UGGCA-GCG- -5'
22882 5' -59.1 NC_005137.2 + 34582 0.67 0.75352
Target:  5'- -aCGCaACGCGGcggGCGCGucGCCG-CGCg -3'
miRNA:   3'- ccGCGcUGCGCUa--CGCGC--UGGCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.