miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22882 5' -59.1 NC_005137.2 + 102797 0.68 0.690239
Target:  5'- uGGCGCGAgGaCGAcUGCgucgaguuuguacacGCGACgcUGUCGCc -3'
miRNA:   3'- -CCGCGCUgC-GCU-ACG---------------CGCUG--GCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 104642 0.68 0.67648
Target:  5'- cGGCGCuGGCuGCGuuuUGCGUG-CCGguaGCg -3'
miRNA:   3'- -CCGCG-CUG-CGCu--ACGCGCuGGCag-CG- -5'
22882 5' -59.1 NC_005137.2 + 80903 0.68 0.656714
Target:  5'- uGGCcacGCucACGCGcauuUGCGCGGCCGUggaggCGCg -3'
miRNA:   3'- -CCG---CGc-UGCGCu---ACGCGCUGGCA-----GCG- -5'
22882 5' -59.1 NC_005137.2 + 30967 0.69 0.636874
Target:  5'- cGCGCcGCGCGccGCGUcgGACCG-CGUg -3'
miRNA:   3'- cCGCGcUGCGCuaCGCG--CUGGCaGCG- -5'
22882 5' -59.1 NC_005137.2 + 118937 0.69 0.636874
Target:  5'- cGGUcgGCGACGUGAuUGC-CGACCGacuggCGUa -3'
miRNA:   3'- -CCG--CGCUGCGCU-ACGcGCUGGCa----GCG- -5'
22882 5' -59.1 NC_005137.2 + 117943 0.69 0.636874
Target:  5'- gGGCGCGuuucgcaaACGCGGUGuCGUGuccgacgaaaccACCGUCa- -3'
miRNA:   3'- -CCGCGC--------UGCGCUAC-GCGC------------UGGCAGcg -5'
22882 5' -59.1 NC_005137.2 + 93559 0.69 0.636874
Target:  5'- aGCGCaaauACGUGGUGCGCGGCgGcaaucaCGCu -3'
miRNA:   3'- cCGCGc---UGCGCUACGCGCUGgCa-----GCG- -5'
22882 5' -59.1 NC_005137.2 + 81311 0.69 0.605124
Target:  5'- cGGCcaaGCGGCGCGuaguuaccgccGCGCGccAUUGUCGCg -3'
miRNA:   3'- -CCG---CGCUGCGCua---------CGCGC--UGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 24319 0.67 0.715537
Target:  5'- cGGUG-GugGCGG-GCaCGGCCGUUGUc -3'
miRNA:   3'- -CCGCgCugCGCUaCGcGCUGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 73543 0.67 0.725154
Target:  5'- cGGCGuCGugGCcucguUGCGCGGCguccaccgauuCGUaCGCg -3'
miRNA:   3'- -CCGC-GCugCGcu---ACGCGCUG-----------GCA-GCG- -5'
22882 5' -59.1 NC_005137.2 + 63463 0.66 0.798673
Target:  5'- cGGCGCG-CGUu-UGUGCcGCC-UCGCg -3'
miRNA:   3'- -CCGCGCuGCGcuACGCGcUGGcAGCG- -5'
22882 5' -59.1 NC_005137.2 + 20376 0.66 0.789894
Target:  5'- cGcCGuCGGCGCGuuuGUGCaCGGCCGUCa- -3'
miRNA:   3'- cC-GC-GCUGCGC---UACGcGCUGGCAGcg -5'
22882 5' -59.1 NC_005137.2 + 12959 0.66 0.78098
Target:  5'- cGGCGCGGCcacaaaCGGUugGCaCGcAUCGUCGCa -3'
miRNA:   3'- -CCGCGCUGc-----GCUA--CGcGC-UGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 5871 0.66 0.78098
Target:  5'- cGGUGCauugucaaGACGUucGAgcgGCGCGGcCCGcCGCu -3'
miRNA:   3'- -CCGCG--------CUGCG--CUa--CGCGCU-GGCaGCG- -5'
22882 5' -59.1 NC_005137.2 + 107053 0.66 0.771942
Target:  5'- aGGCGCucgGACGaGGUGCGCuGCgCGUuuUGCa -3'
miRNA:   3'- -CCGCG---CUGCgCUACGCGcUG-GCA--GCG- -5'
22882 5' -59.1 NC_005137.2 + 34582 0.67 0.75352
Target:  5'- -aCGCaACGCGGcggGCGCGucGCCG-CGCg -3'
miRNA:   3'- ccGCGcUGCGCUa--CGCGC--UGGCaGCG- -5'
22882 5' -59.1 NC_005137.2 + 11428 0.67 0.75352
Target:  5'- aGUGUGGCaCG-UGCucaGCGugCGUCGCu -3'
miRNA:   3'- cCGCGCUGcGCuACG---CGCugGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 37543 0.67 0.744154
Target:  5'- cGGCGCuGGCGCGcacCGUGcCCGUaUGCa -3'
miRNA:   3'- -CCGCG-CUGCGCuacGCGCuGGCA-GCG- -5'
22882 5' -59.1 NC_005137.2 + 42513 0.67 0.731842
Target:  5'- uGCGCGGCGacauuccguccaauUGCGCGACgGUgaacCGCg -3'
miRNA:   3'- cCGCGCUGCgcu-----------ACGCGCUGgCA----GCG- -5'
22882 5' -59.1 NC_005137.2 + 57196 0.67 0.730889
Target:  5'- -cCGCGACGCGuuuuuggccaaccUGCaGCaGGCCGUgGCg -3'
miRNA:   3'- ccGCGCUGCGCu------------ACG-CG-CUGGCAgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.