miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22882 5' -59.1 NC_005137.2 + 93559 0.69 0.636874
Target:  5'- aGCGCaaauACGUGGUGCGCGGCgGcaaucaCGCu -3'
miRNA:   3'- cCGCGc---UGCGCUACGCGCUGgCa-----GCG- -5'
22882 5' -59.1 NC_005137.2 + 117943 0.69 0.636874
Target:  5'- gGGCGCGuuucgcaaACGCGGUGuCGUGuccgacgaaaccACCGUCa- -3'
miRNA:   3'- -CCGCGC--------UGCGCUAC-GCGC------------UGGCAGcg -5'
22882 5' -59.1 NC_005137.2 + 22827 0.68 0.704881
Target:  5'- uGCGCGuugccaaACGCGAgggcggGCGCGcgcauaccgacGCCGcCGCc -3'
miRNA:   3'- cCGCGC-------UGCGCUa-----CGCGC-----------UGGCaGCG- -5'
22882 5' -59.1 NC_005137.2 + 11428 0.67 0.75352
Target:  5'- aGUGUGGCaCG-UGCucaGCGugCGUCGCu -3'
miRNA:   3'- cCGCGCUGcGCuACG---CGCugGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 123989 0.73 0.406368
Target:  5'- aGGcCGUGACGCGcGUGCGCcacguugugcccggcGACCGcUCGUc -3'
miRNA:   3'- -CC-GCGCUGCGC-UACGCG---------------CUGGC-AGCG- -5'
22882 5' -59.1 NC_005137.2 + 85895 0.7 0.538548
Target:  5'- uGUGCGACGCGucGCGCGcCCG-CGa -3'
miRNA:   3'- cCGCGCUGCGCuaCGCGCuGGCaGCg -5'
22882 5' -59.1 NC_005137.2 + 30967 0.69 0.636874
Target:  5'- cGCGCcGCGCGccGCGUcgGACCG-CGUg -3'
miRNA:   3'- cCGCGcUGCGCuaCGCG--CUGGCaGCG- -5'
22882 5' -59.1 NC_005137.2 + 34582 0.67 0.75352
Target:  5'- -aCGCaACGCGGcggGCGCGucGCCG-CGCg -3'
miRNA:   3'- ccGCGcUGCGCUa--CGCGC--UGGCaGCG- -5'
22882 5' -59.1 NC_005137.2 + 139 0.7 0.557924
Target:  5'- cGGCGUacaauucaGGCGCGGgcUGCGCGuCCaaCGCg -3'
miRNA:   3'- -CCGCG--------CUGCGCU--ACGCGCuGGcaGCG- -5'
22882 5' -59.1 NC_005137.2 + 107053 0.66 0.771942
Target:  5'- aGGCGCucgGACGaGGUGCGCuGCgCGUuuUGCa -3'
miRNA:   3'- -CCGCG---CUGCgCUACGCGcUG-GCA--GCG- -5'
22882 5' -59.1 NC_005137.2 + 118937 0.69 0.636874
Target:  5'- cGGUcgGCGACGUGAuUGC-CGACCGacuggCGUa -3'
miRNA:   3'- -CCG--CGCUGCGCU-ACGcGCUGGCa----GCG- -5'
22882 5' -59.1 NC_005137.2 + 81311 0.69 0.605124
Target:  5'- cGGCcaaGCGGCGCGuaguuaccgccGCGCGccAUUGUCGCg -3'
miRNA:   3'- -CCG---CGCUGCGCua---------CGCGC--UGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 80903 0.68 0.656714
Target:  5'- uGGCcacGCucACGCGcauuUGCGCGGCCGUggaggCGCg -3'
miRNA:   3'- -CCG---CGc-UGCGCu---ACGCGCUGGCA-----GCG- -5'
22882 5' -59.1 NC_005137.2 + 84289 0.68 0.696109
Target:  5'- uGGCGCG-CGUGGaaacgGUGuCGAuguCCGUUGCg -3'
miRNA:   3'- -CCGCGCuGCGCUa----CGC-GCU---GGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 73543 0.67 0.725154
Target:  5'- cGGCGuCGugGCcucguUGCGCGGCguccaccgauuCGUaCGCg -3'
miRNA:   3'- -CCGC-GCugCGcu---ACGCGCUG-----------GCA-GCG- -5'
22882 5' -59.1 NC_005137.2 + 37543 0.67 0.744154
Target:  5'- cGGCGCuGGCGCGcacCGUGcCCGUaUGCa -3'
miRNA:   3'- -CCGCG-CUGCGCuacGCGCuGGCA-GCG- -5'
22882 5' -59.1 NC_005137.2 + 84891 0.74 0.362861
Target:  5'- uGGgGUGACGCGugguccacgcucGUGCGUGuuGCaCGUCGCg -3'
miRNA:   3'- -CCgCGCUGCGC------------UACGCGC--UG-GCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 51690 0.73 0.403034
Target:  5'- -cCGUaGACGUGAUGCGCGGCuCGuUUGCa -3'
miRNA:   3'- ccGCG-CUGCGCUACGCGCUG-GC-AGCG- -5'
22882 5' -59.1 NC_005137.2 + 120284 0.72 0.454792
Target:  5'- uGGC-CGACGCG-UGCGCGAUgCGgUGCa -3'
miRNA:   3'- -CCGcGCUGCGCuACGCGCUG-GCaGCG- -5'
22882 5' -59.1 NC_005137.2 + 101150 0.71 0.519408
Target:  5'- aGCGCGGCGuUGAgaagcGCGCGACCcuuuuuuagCGCg -3'
miRNA:   3'- cCGCGCUGC-GCUa----CGCGCUGGca-------GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.