Results 41 - 60 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22882 | 5' | -59.1 | NC_005137.2 | + | 103802 | 0.7 | 0.567687 |
Target: 5'- cGGuCGCGACuCuAUGUGCGACCGUUu- -3' miRNA: 3'- -CC-GCGCUGcGcUACGCGCUGGCAGcg -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 67361 | 1.12 | 0.001038 |
Target: 5'- gGGCGCGACGCGAUGCGCGACCGUCGCc -3' miRNA: 3'- -CCGCGCUGCGCUACGCGCUGGCAGCG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 139 | 0.7 | 0.557924 |
Target: 5'- cGGCGUacaauucaGGCGCGGgcUGCGCGuCCaaCGCg -3' miRNA: 3'- -CCGCG--------CUGCGCU--ACGCGCuGGcaGCG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 22886 | 0.74 | 0.347588 |
Target: 5'- -cCGgGAUGCGGUGCuGCGAUCGgcgCGCa -3' miRNA: 3'- ccGCgCUGCGCUACG-CGCUGGCa--GCG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 95446 | 0.66 | 0.80731 |
Target: 5'- uGGCGCcg-GCGGUGCGUGucuugacaagcGCCGUguUGCc -3' miRNA: 3'- -CCGCGcugCGCUACGCGC-----------UGGCA--GCG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 31038 | 0.79 | 0.17693 |
Target: 5'- uGGCGCacgaagaGGCGCGcgGcCGCGGCCGUUGUc -3' miRNA: 3'- -CCGCG-------CUGCGCuaC-GCGCUGGCAGCG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 23030 | 0.76 | 0.271939 |
Target: 5'- uGCGCG-CGCGucaaCGCGACCGaUCGCg -3' miRNA: 3'- cCGCGCuGCGCuac-GCGCUGGC-AGCG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 95896 | 0.73 | 0.386629 |
Target: 5'- uGGUGCGuCGCGGUGaC-CGuACCGUUGCc -3' miRNA: 3'- -CCGCGCuGCGCUAC-GcGC-UGGCAGCG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 75966 | 0.66 | 0.771942 |
Target: 5'- -uCGUGACGCGgcGCGCGuugguGCaCGgCGCa -3' miRNA: 3'- ccGCGCUGCGCuaCGCGC-----UG-GCaGCG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 108154 | 0.72 | 0.428452 |
Target: 5'- cGGCgGCGGCGuCGGUaugcGCGCGcCCGcccUCGCg -3' miRNA: 3'- -CCG-CGCUGC-GCUA----CGCGCuGGC---AGCG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 52061 | 0.7 | 0.587335 |
Target: 5'- uGCGCauGACGCGAaaCGCG-UUGUCGCa -3' miRNA: 3'- cCGCG--CUGCGCUacGCGCuGGCAGCG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 63637 | 0.67 | 0.75352 |
Target: 5'- cGcCGCGGCGaCGGUcGCGCaucgCGUCGCg -3' miRNA: 3'- cC-GCGCUGC-GCUA-CGCGcug-GCAGCG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 12881 | 0.67 | 0.75352 |
Target: 5'- gGGCGCGGgGCGAaacagGUGGCCGaacacgagCGCa -3' miRNA: 3'- -CCGCGCUgCGCUacg--CGCUGGCa-------GCG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 108104 | 0.67 | 0.744154 |
Target: 5'- -uUGUGguACGCGuUGCGCG-CCGaUCGCa -3' miRNA: 3'- ccGCGC--UGCGCuACGCGCuGGC-AGCG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 35717 | 0.67 | 0.734696 |
Target: 5'- gGGCGCGuuGUcGUGCuuaaucGCGACaCGUCGg -3' miRNA: 3'- -CCGCGCugCGcUACG------CGCUG-GCAGCg -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 56235 | 0.67 | 0.715537 |
Target: 5'- uGCGUuuugggGACGUGAUGC-CGcACCG-CGCa -3' miRNA: 3'- cCGCG------CUGCGCUACGcGC-UGGCaGCG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 87321 | 0.68 | 0.705853 |
Target: 5'- aGCGCGuCGCGAaacgGCGCaGCUGgccaacCGCa -3' miRNA: 3'- cCGCGCuGCGCUa---CGCGcUGGCa-----GCG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 68446 | 0.69 | 0.626945 |
Target: 5'- cGGCGCagcccaugaGGCaGUGGUuCGuCGACCGUUGCg -3' miRNA: 3'- -CCGCG---------CUG-CGCUAcGC-GCUGGCAGCG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 106592 | 0.69 | 0.606114 |
Target: 5'- cGGCGCcGCGguguugaCGAUGCGUaGcCCGUCGUu -3' miRNA: 3'- -CCGCGcUGC-------GCUACGCG-CuGGCAGCG- -5' |
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22882 | 5' | -59.1 | NC_005137.2 | + | 63927 | 0.7 | 0.587335 |
Target: 5'- cGGUuCGcACGCGGUGCGCGAauGUCcCg -3' miRNA: 3'- -CCGcGC-UGCGCUACGCGCUggCAGcG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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