miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22882 5' -59.1 NC_005137.2 + 35717 0.67 0.734696
Target:  5'- gGGCGCGuuGUcGUGCuuaaucGCGACaCGUCGg -3'
miRNA:   3'- -CCGCGCugCGcUACG------CGCUG-GCAGCg -5'
22882 5' -59.1 NC_005137.2 + 42513 0.67 0.731842
Target:  5'- uGCGCGGCGacauuccguccaauUGCGCGACgGUgaacCGCg -3'
miRNA:   3'- cCGCGCUGCgcu-----------ACGCGCUGgCA----GCG- -5'
22882 5' -59.1 NC_005137.2 + 57196 0.67 0.730889
Target:  5'- -cCGCGACGCGuuuuuggccaaccUGCaGCaGGCCGUgGCg -3'
miRNA:   3'- ccGCGCUGCGCu------------ACG-CG-CUGGCAgCG- -5'
22882 5' -59.1 NC_005137.2 + 73543 0.67 0.725154
Target:  5'- cGGCGuCGugGCcucguUGCGCGGCguccaccgauuCGUaCGCg -3'
miRNA:   3'- -CCGC-GCugCGcu---ACGCGCUG-----------GCA-GCG- -5'
22882 5' -59.1 NC_005137.2 + 24319 0.67 0.715537
Target:  5'- cGGUG-GugGCGG-GCaCGGCCGUUGUc -3'
miRNA:   3'- -CCGCgCugCGCUaCGcGCUGGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 56235 0.67 0.715537
Target:  5'- uGCGUuuugggGACGUGAUGC-CGcACCG-CGCa -3'
miRNA:   3'- cCGCG------CUGCGCUACGcGC-UGGCaGCG- -5'
22882 5' -59.1 NC_005137.2 + 99798 0.67 0.714571
Target:  5'- uGCGCGACcgcugguacaaggGCGAcGCG-GGCCgGUUGCg -3'
miRNA:   3'- cCGCGCUG-------------CGCUaCGCgCUGG-CAGCG- -5'
22882 5' -59.1 NC_005137.2 + 87321 0.68 0.705853
Target:  5'- aGCGCGuCGCGAaacgGCGCaGCUGgccaacCGCa -3'
miRNA:   3'- cCGCGCuGCGCUa---CGCGcUGGCa-----GCG- -5'
22882 5' -59.1 NC_005137.2 + 22827 0.68 0.704881
Target:  5'- uGCGCGuugccaaACGCGAgggcggGCGCGcgcauaccgacGCCGcCGCc -3'
miRNA:   3'- cCGCGC-------UGCGCUa-----CGCGC-----------UGGCaGCG- -5'
22882 5' -59.1 NC_005137.2 + 84289 0.68 0.696109
Target:  5'- uGGCGCG-CGUGGaaacgGUGuCGAuguCCGUUGCg -3'
miRNA:   3'- -CCGCGCuGCGCUa----CGC-GCU---GGCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 102797 0.68 0.690239
Target:  5'- uGGCGCGAgGaCGAcUGCgucgaguuuguacacGCGACgcUGUCGCc -3'
miRNA:   3'- -CCGCGCUgC-GCU-ACG---------------CGCUG--GCAGCG- -5'
22882 5' -59.1 NC_005137.2 + 104642 0.68 0.67648
Target:  5'- cGGCGCuGGCuGCGuuuUGCGUG-CCGguaGCg -3'
miRNA:   3'- -CCGCG-CUG-CGCu--ACGCGCuGGCag-CG- -5'
22882 5' -59.1 NC_005137.2 + 91096 0.68 0.674509
Target:  5'- uGCGCGACGacAUGCGCGACaagacuauuaCGCa -3'
miRNA:   3'- cCGCGCUGCgcUACGCGCUGgca-------GCG- -5'
22882 5' -59.1 NC_005137.2 + 97992 0.68 0.666611
Target:  5'- cGCGCGGCGUGG-GUGCGcCCGcCa- -3'
miRNA:   3'- cCGCGCUGCGCUaCGCGCuGGCaGcg -5'
22882 5' -59.1 NC_005137.2 + 107140 0.68 0.666611
Target:  5'- aGGCgGCGGCGgGuuggGUGaCGcCGACCGUCa- -3'
miRNA:   3'- -CCG-CGCUGCgC----UAC-GC-GCUGGCAGcg -5'
22882 5' -59.1 NC_005137.2 + 125032 0.68 0.660675
Target:  5'- cGGCGUGGCGCaggcaacggagccggGcgGCGCGgcGCCGgaucugaacggCGCa -3'
miRNA:   3'- -CCGCGCUGCG---------------CuaCGCGC--UGGCa----------GCG- -5'
22882 5' -59.1 NC_005137.2 + 16593 0.68 0.656714
Target:  5'- uGUGCG-CGCauuGAUGCGCGGCgGcucgacuaaUCGCg -3'
miRNA:   3'- cCGCGCuGCG---CUACGCGCUGgC---------AGCG- -5'
22882 5' -59.1 NC_005137.2 + 80903 0.68 0.656714
Target:  5'- uGGCcacGCucACGCGcauuUGCGCGGCCGUggaggCGCg -3'
miRNA:   3'- -CCG---CGc-UGCGCu---ACGCGCUGGCA-----GCG- -5'
22882 5' -59.1 NC_005137.2 + 112453 0.69 0.6468
Target:  5'- uGGaCGCGGCGgcagGAUGgGCGACgG-CGCc -3'
miRNA:   3'- -CC-GCGCUGCg---CUACgCGCUGgCaGCG- -5'
22882 5' -59.1 NC_005137.2 + 42668 0.69 0.636874
Target:  5'- uGGCGCGACGCcaaGCGCGcaAUCGaCGg -3'
miRNA:   3'- -CCGCGCUGCGcuaCGCGC--UGGCaGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.