miRNA display CGI


Results 21 - 40 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22883 5' -54.1 NC_005137.2 + 35407 0.67 0.936908
Target:  5'- -aGCAcgUCGCGCACaGUGcGCGGGCg -3'
miRNA:   3'- ccUGUa-AGCGCGUGgCGCaCGCUUGg -5'
22883 5' -54.1 NC_005137.2 + 112658 0.67 0.936418
Target:  5'- cGACAaaUUCGCGCACUGcCGUcucguagauuuugGCGu-CCg -3'
miRNA:   3'- cCUGU--AAGCGCGUGGC-GCA-------------CGCuuGG- -5'
22883 5' -54.1 NC_005137.2 + 84310 0.67 0.931899
Target:  5'- cGAUGUcCGuUGCG-CGCGUGCGAGCa -3'
miRNA:   3'- cCUGUAaGC-GCGUgGCGCACGCUUGg -5'
22883 5' -54.1 NC_005137.2 + 78213 0.67 0.931899
Target:  5'- --uUAUUaCGCGCACuUGCauaaUGCGAACCa -3'
miRNA:   3'- ccuGUAA-GCGCGUG-GCGc---ACGCUUGG- -5'
22883 5' -54.1 NC_005137.2 + 99363 0.67 0.921151
Target:  5'- -aGCGUggUCGCGUccGCgCGCGUGCacuGACCg -3'
miRNA:   3'- ccUGUA--AGCGCG--UG-GCGCACGc--UUGG- -5'
22883 5' -54.1 NC_005137.2 + 34700 0.67 0.915414
Target:  5'- -cACAcUUGCGCGCCGgCGUgucgGCGAAUg -3'
miRNA:   3'- ccUGUaAGCGCGUGGC-GCA----CGCUUGg -5'
22883 5' -54.1 NC_005137.2 + 22105 0.67 0.915414
Target:  5'- -aGCGUUCGUGCggccuuguaagaACCGCGUcaaGCGuuGCCc -3'
miRNA:   3'- ccUGUAAGCGCG------------UGGCGCA---CGCu-UGG- -5'
22883 5' -54.1 NC_005137.2 + 112850 0.67 0.915414
Target:  5'- -aGCcUUCGCGCAUCGC-UGCGGcUCg -3'
miRNA:   3'- ccUGuAAGCGCGUGGCGcACGCUuGG- -5'
22883 5' -54.1 NC_005137.2 + 63220 0.67 0.915414
Target:  5'- aGGCAUUaUGCGCA-CGuCGUGCGGcCCc -3'
miRNA:   3'- cCUGUAA-GCGCGUgGC-GCACGCUuGG- -5'
22883 5' -54.1 NC_005137.2 + 14711 0.67 0.915414
Target:  5'- cGGACAUUUgGCGU---GCGUGCuGGCCg -3'
miRNA:   3'- -CCUGUAAG-CGCGuggCGCACGcUUGG- -5'
22883 5' -54.1 NC_005137.2 + 46167 0.68 0.883149
Target:  5'- cGGACG--UGCGCAUCaacaaGUGCGAcACCg -3'
miRNA:   3'- -CCUGUaaGCGCGUGGcg---CACGCU-UGG- -5'
22883 5' -54.1 NC_005137.2 + 24304 0.68 0.876002
Target:  5'- cGGCGUUUGCG-GCUGCGguggugGCGGGCa -3'
miRNA:   3'- cCUGUAAGCGCgUGGCGCa-----CGCUUGg -5'
22883 5' -54.1 NC_005137.2 + 96146 0.68 0.890069
Target:  5'- -cGCA-UCGCGUugcCCGcCGUGCGGuACCa -3'
miRNA:   3'- ccUGUaAGCGCGu--GGC-GCACGCU-UGG- -5'
22883 5' -54.1 NC_005137.2 + 102925 0.68 0.890069
Target:  5'- cGGCAggC-CGCGCUGCGUGUacAGCCg -3'
miRNA:   3'- cCUGUaaGcGCGUGGCGCACGc-UUGG- -5'
22883 5' -54.1 NC_005137.2 + 67707 0.68 0.902581
Target:  5'- aGGGCGcgcgUUGUGC-CCGCGaGCGAcggcgagACCg -3'
miRNA:   3'- -CCUGUa---AGCGCGuGGCGCaCGCU-------UGG- -5'
22883 5' -54.1 NC_005137.2 + 48778 0.68 0.876002
Target:  5'- uGGACGcggCGcCGCACagCGUGUGCGGcACUa -3'
miRNA:   3'- -CCUGUaa-GC-GCGUG--GCGCACGCU-UGG- -5'
22883 5' -54.1 NC_005137.2 + 21230 0.68 0.883149
Target:  5'- uGGGCGacgcUGCGgGCCGCGUGUc-ACCa -3'
miRNA:   3'- -CCUGUaa--GCGCgUGGCGCACGcuUGG- -5'
22883 5' -54.1 NC_005137.2 + 130620 0.68 0.885249
Target:  5'- cGGACA--CGCGCGCCGacaaagccagcaaaaGCGAGCUc -3'
miRNA:   3'- -CCUGUaaGCGCGUGGCgca------------CGCUUGG- -5'
22883 5' -54.1 NC_005137.2 + 98027 0.68 0.890069
Target:  5'- -uGCAcgUCGgGCGCUGCGaGCGggUCc -3'
miRNA:   3'- ccUGUa-AGCgCGUGGCGCaCGCuuGG- -5'
22883 5' -54.1 NC_005137.2 + 33937 0.68 0.903216
Target:  5'- cGGCAUUCGCGCGCaCGUaUuuGAACa -3'
miRNA:   3'- cCUGUAAGCGCGUG-GCGcAcgCUUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.