miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22883 5' -54.1 NC_005137.2 + 33204 0.69 0.868634
Target:  5'- -cGCGUcgaagaGCGCACCGCGgucgaGAACCa -3'
miRNA:   3'- ccUGUAag----CGCGUGGCGCacg--CUUGG- -5'
22883 5' -54.1 NC_005137.2 + 33937 0.68 0.903216
Target:  5'- cGGCAUUCGCGCGCaCGUaUuuGAACa -3'
miRNA:   3'- cCUGUAAGCGCGUG-GCGcAcgCUUGg -5'
22883 5' -54.1 NC_005137.2 + 34524 0.75 0.532655
Target:  5'- uGGACAcgaCGCGCACCGUGUuGCGuucGCg -3'
miRNA:   3'- -CCUGUaa-GCGCGUGGCGCA-CGCu--UGg -5'
22883 5' -54.1 NC_005137.2 + 34621 0.9 0.081607
Target:  5'- cGGACAauuugauuggcggUUUGCGCGCCGUGUGCGAGCg -3'
miRNA:   3'- -CCUGU-------------AAGCGCGUGGCGCACGCUUGg -5'
22883 5' -54.1 NC_005137.2 + 34700 0.67 0.915414
Target:  5'- -cACAcUUGCGCGCCGgCGUgucgGCGAAUg -3'
miRNA:   3'- ccUGUaAGCGCGUGGC-GCA----CGCUUGg -5'
22883 5' -54.1 NC_005137.2 + 35407 0.67 0.936908
Target:  5'- -aGCAcgUCGCGCACaGUGcGCGGGCg -3'
miRNA:   3'- ccUGUa-AGCGCGUGgCGCaCGCUUGg -5'
22883 5' -54.1 NC_005137.2 + 38657 0.67 0.931899
Target:  5'- uGGGCAggCGCGCGuuGCG-GCa---- -3'
miRNA:   3'- -CCUGUaaGCGCGUggCGCaCGcuugg -5'
22883 5' -54.1 NC_005137.2 + 42135 0.68 0.903216
Target:  5'- -uGCGUUCGaCGCguggaACCGcCGUG-GAACCa -3'
miRNA:   3'- ccUGUAAGC-GCG-----UGGC-GCACgCUUGG- -5'
22883 5' -54.1 NC_005137.2 + 46167 0.68 0.883149
Target:  5'- cGGACG--UGCGCAUCaacaaGUGCGAcACCg -3'
miRNA:   3'- -CCUGUaaGCGCGUGGcg---CACGCU-UGG- -5'
22883 5' -54.1 NC_005137.2 + 48778 0.68 0.876002
Target:  5'- uGGACGcggCGcCGCACagCGUGUGCGGcACUa -3'
miRNA:   3'- -CCUGUaa-GC-GCGUG--GCGCACGCU-UGG- -5'
22883 5' -54.1 NC_005137.2 + 48879 0.66 0.95455
Target:  5'- uGGaACAUguacUGCGCCGCGcUGCGGcuucGCCu -3'
miRNA:   3'- -CC-UGUAagc-GCGUGGCGC-ACGCU----UGG- -5'
22883 5' -54.1 NC_005137.2 + 50760 0.66 0.953358
Target:  5'- cGGCGUUCGCGCcgucaucaaacgcaACCGCGc---AGCCg -3'
miRNA:   3'- cCUGUAAGCGCG--------------UGGCGCacgcUUGG- -5'
22883 5' -54.1 NC_005137.2 + 58208 0.71 0.755785
Target:  5'- aGACGgcagCGCGCGCCgccaacGCGUGgGuGACCg -3'
miRNA:   3'- cCUGUaa--GCGCGUGG------CGCACgC-UUGG- -5'
22883 5' -54.1 NC_005137.2 + 58671 0.66 0.950495
Target:  5'- cGGcGCAgcUCGCGCAauUCGCGUuCGGACa -3'
miRNA:   3'- -CC-UGUa-AGCGCGU--GGCGCAcGCUUGg -5'
22883 5' -54.1 NC_005137.2 + 63220 0.67 0.915414
Target:  5'- aGGCAUUaUGCGCA-CGuCGUGCGGcCCc -3'
miRNA:   3'- cCUGUAA-GCGCGUgGC-GCACGCUuGG- -5'
22883 5' -54.1 NC_005137.2 + 63645 0.78 0.409526
Target:  5'- cGACggUCGCGCAUCGCGUcgcgcccGCGGucACCg -3'
miRNA:   3'- cCUGuaAGCGCGUGGCGCA-------CGCU--UGG- -5'
22883 5' -54.1 NC_005137.2 + 63923 0.67 0.921151
Target:  5'- cGGACgGUUCGCaCGCgGUGcGCGAAUg -3'
miRNA:   3'- -CCUG-UAAGCGcGUGgCGCaCGCUUGg -5'
22883 5' -54.1 NC_005137.2 + 63940 0.66 0.946204
Target:  5'- aGAUgAUUUGCGCACCGUGUugacGCGcuuGCa -3'
miRNA:   3'- cCUG-UAAGCGCGUGGCGCA----CGCu--UGg -5'
22883 5' -54.1 NC_005137.2 + 64524 0.68 0.907594
Target:  5'- cGGCGUgUGCGCACCGgcaacguugaccaaCGUGCGcACg -3'
miRNA:   3'- cCUGUAaGCGCGUGGC--------------GCACGCuUGg -5'
22883 5' -54.1 NC_005137.2 + 67076 1.15 0.00183
Target:  5'- gGGACAUUCGCGCACCGCGUGCGAACCg -3'
miRNA:   3'- -CCUGUAAGCGCGUGGCGCACGCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.