miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22883 5' -54.1 NC_005137.2 + 46167 0.68 0.883149
Target:  5'- cGGACG--UGCGCAUCaacaaGUGCGAcACCg -3'
miRNA:   3'- -CCUGUaaGCGCGUGGcg---CACGCU-UGG- -5'
22883 5' -54.1 NC_005137.2 + 21230 0.68 0.883149
Target:  5'- uGGGCGacgcUGCGgGCCGCGUGUc-ACCa -3'
miRNA:   3'- -CCUGUaa--GCGCgUGGCGCACGcuUGG- -5'
22883 5' -54.1 NC_005137.2 + 24304 0.68 0.876002
Target:  5'- cGGCGUUUGCG-GCUGCGguggugGCGGGCa -3'
miRNA:   3'- cCUGUAAGCGCgUGGCGCa-----CGCUUGg -5'
22883 5' -54.1 NC_005137.2 + 48778 0.68 0.876002
Target:  5'- uGGACGcggCGcCGCACagCGUGUGCGGcACUa -3'
miRNA:   3'- -CCUGUaa-GC-GCGUG--GCGCACGCU-UGG- -5'
22883 5' -54.1 NC_005137.2 + 33204 0.69 0.868634
Target:  5'- -cGCGUcgaagaGCGCACCGCGgucgaGAACCa -3'
miRNA:   3'- ccUGUAag----CGCGUGGCGCacg--CUUGG- -5'
22883 5' -54.1 NC_005137.2 + 73908 0.69 0.868634
Target:  5'- aGGGCGUcaucguuuUgGCGCGCC-CGUGCGugGACa -3'
miRNA:   3'- -CCUGUA--------AgCGCGUGGcGCACGC--UUGg -5'
22883 5' -54.1 NC_005137.2 + 18122 0.69 0.867885
Target:  5'- cGGGUA--CGCGCAgcCCGCGUGCuaucacuuggaccGAGCCg -3'
miRNA:   3'- -CCUGUaaGCGCGU--GGCGCACG-------------CUUGG- -5'
22883 5' -54.1 NC_005137.2 + 88015 0.69 0.86105
Target:  5'- gGGAUugccggCGCGgcCACCGCcgagGCGGGCCa -3'
miRNA:   3'- -CCUGuaa---GCGC--GUGGCGca--CGCUUGG- -5'
22883 5' -54.1 NC_005137.2 + 98796 0.69 0.86105
Target:  5'- aGGcCAUUCGUcuGCcaaacGCCGcCGUGCGccGACCg -3'
miRNA:   3'- -CCuGUAAGCG--CG-----UGGC-GCACGC--UUGG- -5'
22883 5' -54.1 NC_005137.2 + 80917 0.69 0.86105
Target:  5'- -cGCAUUUGCGCgGCCGUGgagGCGcgcgucaauGGCCa -3'
miRNA:   3'- ccUGUAAGCGCG-UGGCGCa--CGC---------UUGG- -5'
22883 5' -54.1 NC_005137.2 + 94485 0.69 0.853256
Target:  5'- -uGCcgUCGUGCA-CGUGcGCGAACCc -3'
miRNA:   3'- ccUGuaAGCGCGUgGCGCaCGCUUGG- -5'
22883 5' -54.1 NC_005137.2 + 30933 0.69 0.845258
Target:  5'- -cACGUgCGCGCGCCGCGgcacaaagcaUGCuGAACg -3'
miRNA:   3'- ccUGUAaGCGCGUGGCGC----------ACG-CUUGg -5'
22883 5' -54.1 NC_005137.2 + 96919 0.7 0.828681
Target:  5'- aGGCuauuuguUUCGCGC-CCGCGUGUgcauGAACa -3'
miRNA:   3'- cCUGu------AAGCGCGuGGCGCACG----CUUGg -5'
22883 5' -54.1 NC_005137.2 + 24722 0.7 0.828681
Target:  5'- aGACAUUgGCGCcguggggcAUCGCGUGCcuGGACa -3'
miRNA:   3'- cCUGUAAgCGCG--------UGGCGCACG--CUUGg -5'
22883 5' -54.1 NC_005137.2 + 30736 0.7 0.811377
Target:  5'- uGGGCGUgaaugccgcgaCGCGCGCC-CGUGCGuugcggcGCCc -3'
miRNA:   3'- -CCUGUAa----------GCGCGUGGcGCACGCu------UGG- -5'
22883 5' -54.1 NC_005137.2 + 85899 0.7 0.802474
Target:  5'- cGACGcgUCGCGCGcCCGCGagugGCaGAGCa -3'
miRNA:   3'- cCUGUa-AGCGCGU-GGCGCa---CG-CUUGg -5'
22883 5' -54.1 NC_005137.2 + 79580 0.7 0.793413
Target:  5'- -----cUUGCGCGCCGCcGUGCGAuaGCg -3'
miRNA:   3'- ccuguaAGCGCGUGGCG-CACGCU--UGg -5'
22883 5' -54.1 NC_005137.2 + 68652 0.7 0.793413
Target:  5'- cGACAUcaacaacgUGCGCACgCGCGUGgCGGAUg -3'
miRNA:   3'- cCUGUAa-------GCGCGUG-GCGCAC-GCUUGg -5'
22883 5' -54.1 NC_005137.2 + 106582 0.71 0.755785
Target:  5'- uGGACAUUuaCG-GCGCCGCGguguugacgaUGCGuAGCCc -3'
miRNA:   3'- -CCUGUAA--GCgCGUGGCGC----------ACGC-UUGG- -5'
22883 5' -54.1 NC_005137.2 + 58208 0.71 0.755785
Target:  5'- aGACGgcagCGCGCGCCgccaacGCGUGgGuGACCg -3'
miRNA:   3'- cCUGUaa--GCGCGUGG------CGCACgC-UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.