miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22884 3' -52.1 NC_005137.2 + 100051 0.66 0.974498
Target:  5'- gGCGCGCGgcgcguucagCAUGcuuugugccgcGGCGCGCGG-CAc- -3'
miRNA:   3'- -UGCGUGCa---------GUAU-----------UCGUGCGCCaGUuu -5'
22884 3' -52.1 NC_005137.2 + 100628 0.71 0.810986
Target:  5'- cGCGUGCG-CAcAGGCACGCauuacGGUCAAAg -3'
miRNA:   3'- -UGCGUGCaGUaUUCGUGCG-----CCAGUUU- -5'
22884 3' -52.1 NC_005137.2 + 106203 0.68 0.930039
Target:  5'- cCGCACGU----GGgACGCGGUCGc- -3'
miRNA:   3'- uGCGUGCAguauUCgUGCGCCAGUuu -5'
22884 3' -52.1 NC_005137.2 + 112692 0.66 0.971654
Target:  5'- gACGCACGUUAaacgcGGGCACGUcGUCc-- -3'
miRNA:   3'- -UGCGUGCAGUa----UUCGUGCGcCAGuuu -5'
22884 3' -52.1 NC_005137.2 + 113697 0.69 0.878156
Target:  5'- cGCGCACGUC----GCACaGCGcGUCAAu -3'
miRNA:   3'- -UGCGUGCAGuauuCGUG-CGC-CAGUUu -5'
22884 3' -52.1 NC_005137.2 + 114143 0.67 0.953975
Target:  5'- gGCGCAUcUCGUGcAGCaACGCGGUg--- -3'
miRNA:   3'- -UGCGUGcAGUAU-UCG-UGCGCCAguuu -5'
22884 3' -52.1 NC_005137.2 + 122425 0.7 0.846284
Target:  5'- gACGCGgGUUuUGcugcAGCGCGCGGUCu-- -3'
miRNA:   3'- -UGCGUgCAGuAU----UCGUGCGCCAGuuu -5'
22884 3' -52.1 NC_005137.2 + 124399 0.75 0.583355
Target:  5'- cGCGCGCGUCGUuucAGCGCGCaGUUg-- -3'
miRNA:   3'- -UGCGUGCAGUAu--UCGUGCGcCAGuuu -5'
22884 3' -52.1 NC_005137.2 + 125760 0.66 0.957993
Target:  5'- cCGCGCGUUucgagcGGCGCGUGG-CAAu -3'
miRNA:   3'- uGCGUGCAGuau---UCGUGCGCCaGUUu -5'
22884 3' -52.1 NC_005137.2 + 126794 0.66 0.961764
Target:  5'- uUGCACGUUuUGaagcAGCGCGCGGacaCAAAa -3'
miRNA:   3'- uGCGUGCAGuAU----UCGUGCGCCa--GUUU- -5'
22884 3' -52.1 NC_005137.2 + 128683 0.69 0.885534
Target:  5'- cAUGCACGccucCAcGAGCGCguuGCGGUCGAGg -3'
miRNA:   3'- -UGCGUGCa---GUaUUCGUG---CGCCAGUUU- -5'
22884 3' -52.1 NC_005137.2 + 129013 0.72 0.742713
Target:  5'- gUGCACGagcuguGCACGCGGUCAAc -3'
miRNA:   3'- uGCGUGCaguauuCGUGCGCCAGUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.