Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22884 | 3' | -52.1 | NC_005137.2 | + | 129013 | 0.72 | 0.742713 |
Target: 5'- gUGCACGagcuguGCACGCGGUCAAc -3' miRNA: 3'- uGCGUGCaguauuCGUGCGCCAGUUu -5' |
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22884 | 3' | -52.1 | NC_005137.2 | + | 35407 | 0.69 | 0.899542 |
Target: 5'- -aGCACGUCGcgcacAGUGCGCGGgcggCAAAa -3' miRNA: 3'- ugCGUGCAGUau---UCGUGCGCCa---GUUU- -5' |
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22884 | 3' | -52.1 | NC_005137.2 | + | 45 | 0.68 | 0.922162 |
Target: 5'- -gGCGCGUCAaccgcuuguauaaAAGCGCGCGcGUCGu- -3' miRNA: 3'- ugCGUGCAGUa------------UUCGUGCGC-CAGUuu -5' |
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22884 | 3' | -52.1 | NC_005137.2 | + | 18972 | 0.67 | 0.935348 |
Target: 5'- aACGCAUGUUgAUGAGCACgucgcaGCGcGUCAc- -3' miRNA: 3'- -UGCGUGCAG-UAUUCGUG------CGC-CAGUuu -5' |
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22884 | 3' | -52.1 | NC_005137.2 | + | 83019 | 0.67 | 0.949705 |
Target: 5'- -aGCGCGUCAUuguGUuguuUGCGGUCGu- -3' miRNA: 3'- ugCGUGCAGUAuu-CGu---GCGCCAGUuu -5' |
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22884 | 3' | -52.1 | NC_005137.2 | + | 95163 | 0.67 | 0.952297 |
Target: 5'- -gGCACGguaaaguuuguaAUAGGCACGCGGUg--- -3' miRNA: 3'- ugCGUGCag----------UAUUCGUGCGCCAguuu -5' |
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22884 | 3' | -52.1 | NC_005137.2 | + | 114143 | 0.67 | 0.953975 |
Target: 5'- gGCGCAUcUCGUGcAGCaACGCGGUg--- -3' miRNA: 3'- -UGCGUGcAGUAU-UCG-UGCGCCAguuu -5' |
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22884 | 3' | -52.1 | NC_005137.2 | + | 125760 | 0.66 | 0.957993 |
Target: 5'- cCGCGCGUUucgagcGGCGCGUGG-CAAu -3' miRNA: 3'- uGCGUGCAGuau---UCGUGCGCCaGUUu -5' |
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22884 | 3' | -52.1 | NC_005137.2 | + | 126794 | 0.66 | 0.961764 |
Target: 5'- uUGCACGUUuUGaagcAGCGCGCGGacaCAAAa -3' miRNA: 3'- uGCGUGCAGuAU----UCGUGCGCCa--GUUU- -5' |
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22884 | 3' | -52.1 | NC_005137.2 | + | 69482 | 0.66 | 0.965294 |
Target: 5'- cGCGCGCGUCGUAgGGCuuaaagaaaACGUGGg---- -3' miRNA: 3'- -UGCGUGCAGUAU-UCG---------UGCGCCaguuu -5' |
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22884 | 3' | -52.1 | NC_005137.2 | + | 20517 | 0.66 | 0.971654 |
Target: 5'- uGCaCACGUgGUAguugaaacAGCugGCGGUUAGu -3' miRNA: 3'- -UGcGUGCAgUAU--------UCGugCGCCAGUUu -5' |
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22884 | 3' | -52.1 | NC_005137.2 | + | 66878 | 1.06 | 0.007424 |
Target: 5'- cACGCACGUCAUAAGCACGCGGUCAAAg -3' miRNA: 3'- -UGCGUGCAGUAUUCGUGCGCCAGUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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