Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22884 | 3' | -52.1 | NC_005137.2 | + | 66878 | 1.06 | 0.007424 |
Target: 5'- cACGCACGUCAUAAGCACGCGGUCAAAg -3' miRNA: 3'- -UGCGUGCAGUAUUCGUGCGCCAGUUU- -5' |
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22884 | 3' | -52.1 | NC_005137.2 | + | 33201 | 0.75 | 0.583355 |
Target: 5'- uUGCGCGUCGaaGAGCGCaccGCGGUCGAGa -3' miRNA: 3'- uGCGUGCAGUa-UUCGUG---CGCCAGUUU- -5' |
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22884 | 3' | -52.1 | NC_005137.2 | + | 124399 | 0.75 | 0.583355 |
Target: 5'- cGCGCGCGUCGUuucAGCGCGCaGUUg-- -3' miRNA: 3'- -UGCGUGCAGUAu--UCGUGCGcCAGuuu -5' |
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22884 | 3' | -52.1 | NC_005137.2 | + | 129013 | 0.72 | 0.742713 |
Target: 5'- gUGCACGagcuguGCACGCGGUCAAc -3' miRNA: 3'- uGCGUGCaguauuCGUGCGCCAGUUu -5' |
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22884 | 3' | -52.1 | NC_005137.2 | + | 31039 | 0.71 | 0.792225 |
Target: 5'- gGCGCACGaag-AGGCGCGCGGcCGc- -3' miRNA: 3'- -UGCGUGCaguaUUCGUGCGCCaGUuu -5' |
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22884 | 3' | -52.1 | NC_005137.2 | + | 100628 | 0.71 | 0.810986 |
Target: 5'- cGCGUGCG-CAcAGGCACGCauuacGGUCAAAg -3' miRNA: 3'- -UGCGUGCaGUaUUCGUGCG-----CCAGUUU- -5' |
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22884 | 3' | -52.1 | NC_005137.2 | + | 122425 | 0.7 | 0.846284 |
Target: 5'- gACGCGgGUUuUGcugcAGCGCGCGGUCu-- -3' miRNA: 3'- -UGCGUgCAGuAU----UCGUGCGCCAGuuu -5' |
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22884 | 3' | -52.1 | NC_005137.2 | + | 29843 | 0.69 | 0.870535 |
Target: 5'- -aGCuACGauuUCAaAGGCGCGUGGUCAAAc -3' miRNA: 3'- ugCG-UGC---AGUaUUCGUGCGCCAGUUU- -5' |
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22884 | 3' | -52.1 | NC_005137.2 | + | 113697 | 0.69 | 0.878156 |
Target: 5'- cGCGCACGUC----GCACaGCGcGUCAAu -3' miRNA: 3'- -UGCGUGCAGuauuCGUG-CGC-CAGUUu -5' |
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22884 | 3' | -52.1 | NC_005137.2 | + | 128683 | 0.69 | 0.885534 |
Target: 5'- cAUGCACGccucCAcGAGCGCguuGCGGUCGAGg -3' miRNA: 3'- -UGCGUGCa---GUaUUCGUG---CGCCAGUUU- -5' |
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22884 | 3' | -52.1 | NC_005137.2 | + | 74345 | 0.69 | 0.892664 |
Target: 5'- aGCGC-CGUCGgcAAGCACGaGGUCGc- -3' miRNA: 3'- -UGCGuGCAGUa-UUCGUGCgCCAGUuu -5' |
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22884 | 3' | -52.1 | NC_005137.2 | + | 35407 | 0.69 | 0.899542 |
Target: 5'- -aGCACGUCGcgcacAGUGCGCGGgcggCAAAa -3' miRNA: 3'- ugCGUGCAGUau---UCGUGCGCCa---GUUU- -5' |
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22884 | 3' | -52.1 | NC_005137.2 | + | 1654 | 0.68 | 0.905513 |
Target: 5'- -gGCACGUU-UGGGCucggucgguuucgGCGCGGUCAGc -3' miRNA: 3'- ugCGUGCAGuAUUCG-------------UGCGCCAGUUu -5' |
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22884 | 3' | -52.1 | NC_005137.2 | + | 45 | 0.68 | 0.922162 |
Target: 5'- -gGCGCGUCAaccgcuuguauaaAAGCGCGCGcGUCGu- -3' miRNA: 3'- ugCGUGCAGUa------------UUCGUGCGC-CAGUuu -5' |
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22884 | 3' | -52.1 | NC_005137.2 | + | 67981 | 0.68 | 0.930039 |
Target: 5'- aACGCACGUCGUcguuGGCcACGCGcgagCAAu -3' miRNA: 3'- -UGCGUGCAGUAu---UCG-UGCGCca--GUUu -5' |
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22884 | 3' | -52.1 | NC_005137.2 | + | 106203 | 0.68 | 0.930039 |
Target: 5'- cCGCACGU----GGgACGCGGUCGc- -3' miRNA: 3'- uGCGUGCAguauUCgUGCGCCAGUuu -5' |
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22884 | 3' | -52.1 | NC_005137.2 | + | 18972 | 0.67 | 0.935348 |
Target: 5'- aACGCAUGUUgAUGAGCACgucgcaGCGcGUCAc- -3' miRNA: 3'- -UGCGUGCAG-UAUUCGUG------CGC-CAGUuu -5' |
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22884 | 3' | -52.1 | NC_005137.2 | + | 39761 | 0.67 | 0.940395 |
Target: 5'- gACGUcCGUCAUAuuccccGGCACGUGG-CAc- -3' miRNA: 3'- -UGCGuGCAGUAU------UCGUGCGCCaGUuu -5' |
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22884 | 3' | -52.1 | NC_005137.2 | + | 63652 | 0.67 | 0.945179 |
Target: 5'- cGCGCaucGCGUCGc--GCcCGCGGUCAc- -3' miRNA: 3'- -UGCG---UGCAGUauuCGuGCGCCAGUuu -5' |
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22884 | 3' | -52.1 | NC_005137.2 | + | 83019 | 0.67 | 0.949705 |
Target: 5'- -aGCGCGUCAUuguGUuguuUGCGGUCGu- -3' miRNA: 3'- ugCGUGCAGUAuu-CGu---GCGCCAGUuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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